BtaINT0150482 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015065 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr1:57258644-57260192:+
Coord C1 exon
chr1:57258644-57258760
Coord A exon
chr1:57258761-57260020
Coord C2 exon
chr1:57260021-57260192
Length
1260 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
3' ss Seq
GGACCCCTCCTCTCCTAAAGGCT
3' ss Score
5.12
Exon sequences
Seq C1 exon
GTATTCCATGCAATGACAGAACTTTTAAGTGTGGCAATGATGTTTGCATTAGGAAACAAAATGCAAAATGTGATGGCAACGTGGACTGTCCGGATGGAACCGATGAAGAAGGCTGTC
Seq A exon
GTGAGTAGAAACATGTTCCTTCGGATCTTTTGTATTTCTCCCTCAATCTGTTTTTCATTTTAATTTCCTTCTTGGTATAATTCCCCTGGCAGAAGTTGCCACAGACCAGGGAAGAAGAGTAGATACTGATGAACGGAATCTGAAATGGTTTCTCAGAATTAAAAATTCTAGAGTGAATTCTTTTCATTCTTTCTTAATTCTTAAGAATAAGAAATAATTAAAAATTACTTATTCCTTATTTTCTGCCTTATTTCTTGATAATAACTATTCATGCACTAGATGTTTACATAGAGAACTCCCACTTTCTAATAACCCTAATCAAGGCATAAGCTCTTAAAAAAAAAAAACCTATGAGAAAAGAAATAGGTACTGGAATACTGTGGATGATTTTATTAATTATGCCTTATGTTGTGATCAATGTCAAGAGCTGGTTCTTTCTTTAGCTATAACCTGAGAACTATAGTCTGCCATGTGTTATTATTAACCACAGGATCTCTAATTGGCCATGTGCCGACATATTAATTATATATCCTTCTCAAGGCAATGGCACCCCACTCCAGTACACTTGCCTGGAAAACCCCATGGATGGAGGAGTCTGGTAGGCTGCAGTCCATGGGGTCACTAAATCGGACACGACTGAGCAACTTCACTTTCACTTTTCACTTCCATGCTTTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGGGGAACCTGGTGGGCTGCCGTCTATGGGGTCACACAGAGTCAGACACGACTGAAGTGACTTAGCAGCAGCAGCAGCAATACTATTTACACTGGAAAATAATTACTTTGATACCTAGTTTTTCTTAACTAGGTTTTCATTTGTATTGGACTTACAAATTCTCTCCTGAATCAACACAATTTCAAGGACACTCTCAATTTGGTTGCTTTTGACACTAATCTTTCTTCTCTGTCTAACAACCTGAACTCCATAGCTGCTGTTTTTATCGATACAGCTGTTACTAATAGATCCCTTCCTCCCCACATGTGTGTTACTTTACAGAGACTCTGCATCAAGGCCTGTTTTCAGGAAGGAGGTAGTGGTTTGTTGGTGATGGTTTCAGACAGACCCACGTATTGCCTCTCTAGATAAGCAAGGGATTTCCAGTTGCTTACCTGGTTAGTTACTTCCCAACCCAGCTCAAAATTTGACTGAATGCTTGGTTTTTCTTCCAAGTCTGCCTTTAACTCATGGGACCCCTCCTCTCCTAAAG
Seq C2 exon
GCTGCAGCAGCAGTTCCCCCACCCTCCACCGCATCATCGGGGGCACTGACACCCAGGAGGGGGGTTGGCCGTGGCAAGTCAGCCTCCACTTCGTTGGATCTGCCTACTGTGGTGCCTCAGTCATCTCCAGGGAGTGGCTCCTCTCTGCTGCCCACTGTTTCCATGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015065:ENSBTAT00000020053:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.5)
A:
NA
C2:
PF0008921=Trypsin=PU(20.0=79.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTCCATGCAATGACAGAACT
R:
GAAACAGTGGGCAGCAGAGAG
Band lengths:
278-1538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development