MmuINT0162773 @ mm9
Intron Retention
Gene
ENSMUSG00000033177 | Tmprss7
Description
transmembrane serine protease 7 [Source:MGI Symbol;Acc:MGI:2686594]
Coordinates
chr16:45662267-45663498:-
Coord C1 exon
chr16:45663382-45663498
Coord A exon
chr16:45662439-45663381
Coord C2 exon
chr16:45662267-45662438
Length
943 bp
Sequences
Splice sites
5' ss Seq
GCGGTGCGT
5' ss Score
8.66
3' ss Seq
TGACACTTCCTCTCCTAAAGGCT
3' ss Score
6.37
Exon sequences
Seq C1 exon
GCATCCCATGCACCAGTAGGACCTTTAAATGTGGCAATGACATTTGCTTCAGGAAGCAAAATGCACAATGTGATGGTATAGTGGACTGTCCAGATGGAAGTGACGAGGAAGGCTGCG
Seq A exon
GTGCGTAGAAATGGCTGCTTTTGACTCCTGTATTCCCTCTTCCTTTATCCACTGTCCACTTTCATTGCCTCTGAGTATCATTCCTCAGACAAAGGCTGCTCAGGCTCTAGGAAAATATACTATGTATTAGTGAACTAGCTCTGATGTTGCTCCAAAGAGACAAAAGCCCCAAAGGTTTGTTCTGACTTCCTTCTTGATAATGGGAGGTAACAGGGTGTTTTCTAGTAATCCCAGTCAAGGAAGAAGTCACCTGTGAATAAAGCAATGGAGCCCAGTGGCTTTTCTTTTAGTTATGACTCTCGATAAGAGCAACATCGAGATGACTTATGCCATATGCTCTCCTTAGTCAGGTGGCCTCTCATTAAGAGCAATAATCAACCTTATTGATGTTATTTACACTGAAAAGGAACAGCTCTGATGATTAGGTTTCTAGTACATGTCCACATGTCTTGGACTTACACAGTCTCTCCAAAACGCCTTCCAGTAAACCAGCACAAAAACATTCTCAGCTCTTTTATAGTTGAAACCTACTGTTTCCTTTCTACATAGCAAACTAACTTCATGGCTGCTGATTATGTGAGTCTAGTTGTTACTATGGGGCCTTCCTCCCCAGTATGCATAGGTGTGTAGACTCCAAGTCAGGGCATGCTCTCAGCAACAAAGGAGTGGTTCTGTGTTGGCACTGGTTCCATACCTATAGATTTCCTCTCTGCCAGATAACCAGGAGGTTTTCAACTGTTGGTTTGATGAGTCAGATACCAACCCAGCCATAAATGTGATTATGTTTCTGCTTCTCCCTCCCCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTGTCTCTGTCTCTCTGTGTGTGTGTGTGTGCTTCTATTCTGTCTGCCTTTAAGTCATATGACACTTCCTCTCCTAAAG
Seq C2 exon
GCTGTAGCAGGAGTTCTTCCTTCCTTCACCGAATCGTTGGTGGTTCTGACTCCCAGGAGGGGACCTGGCCATGGCAGGTCAGCCTCCACTTTGTTGGATCAGCCTACTGTGGTGCCTCAGTCATCTCCAGGGAGTGGCTTCTCTCTGCAGCCCATTGTTTCCATGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033177-Tmprss7:NM_172455:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.5)
A:
NA
C2:
PF0008921=Trypsin=PU(20.0=79.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCATGCACCAGTAGGAC
R:
GGAAACAATGGGCTGCAGAGA
Band lengths:
278-1221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: