RnoINT0144085 @ rn6
Intron Retention
Gene
ENSRNOG00000005903 | St14
Description
suppression of tumorigenicity 14 [Source:RGD Symbol;Acc:69288]
Coordinates
chr8:32243298-32244230:-
Coord C1 exon
chr8:32244108-32244230
Coord A exon
chr8:32243485-32244107
Coord C2 exon
chr8:32243298-32243484
Length
623 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
GTTCTCTGTCCCCTCTCCAGACT
3' ss Score
9.2
Exon sequences
Seq C1 exon
TGAATGCCGTCTCTTGCACCAAATATACCTACCGCTGCCAAAATGGCCTCTGTCTGAACAAGGGCAACCCTGAGTGTGATGGGAAGAAGGACTGCAGCGATGGCTCGGATGAGAAAAACTGTG
Seq A exon
GTAAGCAGGGCGACTGTGCATGGTGGGCCGGGGTGTTTCCTGTGCAAGGTACGCAACTGGGAGAGCAGCCAGGGCTGGAGATCTTACCAGAGCCTTACTCACACAGCCTGGTATCCACTCAGAGGGCACCTCTGTCTGGAGGAAAGGAAGACTTCGCCACTTGGCACAAACACACAGCATGTCAGCACCTCGGGGACATAGCTGACATACTGGTTGCTCCATAGACAGACAGATAGCCATGGGCGAGTGGCTTGGAGGAGAAAGAGCCCAGCTGCCCAAGCTTCATCCTCACCCACCCGTGCCTTAAGCCTGTGTGTCCTAGGAGAGCTGGCTGGATGCCTTCATGTTTCTCCGTGCACTGTGCTCCGAGCTGTATCCCTTAGCAAGTCGTAGCACATCAAGCCTGAGAAAGCAGCAGGTGTCTAGGATGTACTCGTGCAATATAGCATGGGGTAGGGAGAGGGGGATGGAGGAGGATGGGAGATCTGTGAGAGATAGGGACACTCTGGCGCTAGTGTTGCTGTGCACACCCAGTGGAGATCCCTGAGCCGAGCCTCCCCGTGCATAAGGAACGCCCCTTTGATGTTGAGTGGCTGCACTTTGGTTCTCTGTCCCCTCTCCAG
Seq C2 exon
ACTGTGGGCTGCGATCCTTTACCAAACAGGCTCGAGTGGTTGGTGGCACGAATGCGGACGAGGGCGAGTGGCCCTGGCAGGTGAGCCTCCACGCTCTGGGCCAGGGCCACTTGTGTGGGGCCTCGCTCATCTCTCCTGACTGGCTGGTCTCTGCAGCTCATTGCTTTCAGGATGAGACAATTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005903:ENSRNOT00000009139:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.5)
A:
NA
C2:
PF0008921=Trypsin=PU(21.3=79.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGCCGTCTCTTGCACC
R:
TTGAAAATTGTCTCATCCTGAAAGCA
Band lengths:
310-933
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]