MmuINT0153109 @ mm9
Intron Retention
Gene
ENSMUSG00000031995 | St14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:MGI Symbol;Acc:MGI:1338881]
Coordinates
chr9:30903120-30904182:-
Coord C1 exon
chr9:30904060-30904182
Coord A exon
chr9:30903307-30904059
Coord C2 exon
chr9:30903120-30903306
Length
753 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
GTTCTCTGTCCCCTCTCCAGACT
3' ss Score
9.2
Exon sequences
Seq C1 exon
TGAATGTCGTCTCTTGCACCAAATATACCTACCGCTGCCAAAATGGCCTCTGTCTGAGCAAGGGCAACCCTGAGTGTGATGGGAAGACGGACTGTAGCGATGGCTCCGATGAGAAAAACTGTG
Seq A exon
GTAAGCAGGGCAACTGTGCATGGTGGGCCAGGGTGTTCACTGTGCAAGGTACGCATCTGGGCGAGCACCCAGGGGTGGAGATCTTACCAGAACCCCACTCACGCAACCCAGCACCCACTCAGAGGGCACATCTGTCTGGAGGAAAGGAAGACTTCGCCACTTGGCACAAACTGGCTTCCCTGTGGGAAGGCAGTATGTCAGCACCTCCGGGACATAGCTGACATACTGGTTGCTCCATAGACAGACAGATAGCTGCGGGTGAGTGGCTCGGAGGAGAAAGAGCCCAGCTGCCCAAGTTTCGTCCTCACCAAGCCATGTGTGTTAAGCCTGTGTGTTCTAGAAGAGCTCTGGGCTGTGTCCCCTAGCCAGTGATAGCGCATCAATCCTGTCAAGGCAGCAGGGCCTGGATGTGCTTGCGCAGTATAGCATGGGGCAGGGAGAGCGGGATGAGGGGGATGGCAGATCTCTGAGGCTTAGGGACACAGGGAGAGCGGGATGAGGGGGATGGCAGATCTCTGAGGCTTAGGGACACAGGGAGAGCGGGATGAGGGGGATGGCAGATCTCTGAGGCTTAGGGACACAGGGAGAGCGGGATGAGGGGGATGGCAGATCTCTGAGGCTTAGGGACGCTTCTGCTCTAGTGTTGCTGCGCACACCCAGTGGAGATCAGATTTCTGAGCCGAGTCCCCCATGCATAAGGAGCACCCCTTTGTTGTTGAGTGGCTGTACTTGGGTTCTCTGTCCCCTCTCCAG
Seq C2 exon
ACTGTGGGCTGCGATCCTTTACCAAACAGGCTCGCGTGGTTGGTGGCACGAATGCGGACGAGGGCGAGTGGCCCTGGCAGGTGAGCCTCCACGCCCTGGGCCAGGGCCACTTGTGTGGGGCCTCGCTCATCTCTCCTGACTGGCTGGTCTCTGCAGCTCATTGCTTTCAGGATGACAAAAATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031995-St14:NM_011176:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.5)
A:
NA
C2:
PF0008921=Trypsin=PU(21.3=79.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTCGTCTCTTGCACCA
R:
TTGAAATTTTTGTCATCCTGAAAGCA
Band lengths:
310-1063
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: