BtaINT0141590 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019712 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:HGNC:11344]
Coordinates
chr29:36964493-36965495:+
Coord C1 exon
chr29:36964493-36964615
Coord A exon
chr29:36964616-36965308
Coord C2 exon
chr29:36965309-36965495
Length
693 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
CCTGCCTCTGTCTCTCCCAGACT
3' ss Score
10.63
Exon sequences
Seq C1 exon
GGAAAGCCGTCCCCTGCACTGAACACACCCACCGCTGCCTCAACGGGCTCTGTGTGGACAAGAGCAACCCCCAGTGTGACGGGAACGAGGACTGCACTGATGGCTCGGATGAGAAGGACTGTG
Seq A exon
GTGAGCAGGGCTGCTGCGTACAGCTGTGCAGGTTGTTCACTGAGCAAGGCACATACAGAGGCAGAAATCACACCAGGGCCTCACTCACCCAGCTCTGCCCCCGGGAAAGGATGTGTCTGCCTGGAGGAAAGGACGACTTTGCTGACTGTCACCCAGGCACTGCCTCACCGGCAGCTCTGATCCTAGAGGCAGGGCCCAGGGCAGCTAGTATGTCAGGCCTCTGTGGCCAGGCTGTGGTGCTGGGCTGACCCCTGCTTTGCAGACCTGGCCATGGGGGCAAGGCCAGGTTTCTCTGTGTTACCTGGAGGAGAGAGAGCACAGCTCCTGGAGCCCTGGGCAGGGTTCTGTCCACACCGCGCCCGTATTTGCAGCCCCTTGCATATTTCAGAAGCGCTGCCACAGGTTCAATGTGTGCAGAGCTGGGCCGTTCTGACTTCCCGTCACCCATTGCTCTTGTCTCTGAGAGCTGTGTCCTTCAGCACCCAGTGAGGATATCTAGGTAAATGACATCCAAATTAAATCTCAGCAAACCAGCAGAGGTCTGAAGGCCCACGATGGCACCTGTGCAGGAGTCCAGGGGTGGGGGAGTGAGGGTTTTGAGTCCGGGGGCAGGGAGAGGGGCCGGGAGGCTGGTCTAGCAGGCTGCCCCCGCCCCCGCTCCCACCCGGTGACTCCTGCCTCTGTCTCTCCCAG
Seq C2 exon
ACTGTGGGCGGCGGTCGTTCACCAGGCAGTCCCGGGTCGTCGGAGGTGAGAATTCAGACCAAGGCGAGTGGCCCTGGCAGGTGAGCCTCCATGCCCAGGGCCACGGCCACTTGTGCGGGGCCTCTCTCATCTCCCCCAGCTGGATGATATCTGCCGCACATTGCTTCGTCGATGACAGAGGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019712:ENSBTAT00000026272:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.175
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.5)
A:
NA
C2:
PF0008921=Trypsin=PU(21.3=79.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGCCGTCCCCTGCA
R:
CTGAATCCTCTGTCATCGACGA
Band lengths:
310-1003
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]