HsaINT0159712 @ hg38
Intron Retention
Gene
ENSG00000149418 | ST14
Description
suppression of tumorigenicity 14 [Source:HGNC Symbol;Acc:HGNC:11344]
Coordinates
chr11:130198947-130200137:+
Coord C1 exon
chr11:130198947-130199069
Coord A exon
chr11:130199070-130199950
Coord C2 exon
chr11:130199951-130200137
Length
881 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
GTTCTCTGCTCCCTCTGCAGACT
3' ss Score
10.65
Exon sequences
Seq C1 exon
TGAACGTCGTCACTTGTACCAAACACACCTACCGCTGCCTCAATGGGCTCTGCTTGAGCAAGGGCAACCCTGAGTGTGACGGGAAGGAGGACTGTAGCGACGGCTCAGATGAGAAGGACTGCG
Seq A exon
GTGAGCAGGGCATCCGAGTACGGTTGTGCAGGTTGTTCACTGTGTGAAGTGCCCACCAGAGGGTGCACCTGGAGGTGCAATCCCGCCAGCACCTCACTTAGCAGCTCTGTGCTTGGGTGAGAGGGTGTGTCTCCTGGAGGAAAGGATAGCCTTGCCAGTTGGCATGAAGGCACCACCCCACGGGCTGGCTCTGGTCTTGGAGAAAGGCCCGTACGGCCAGCATCTCAGCGCCTCTGTAGCATGGCGGGGTCGTGGCTGCAGTGCGTTGCTGGCCCCTGCTGTGTAGACACAGCTGTGGAGCAGTAGCCTGGAGAAGAGCGGCCCAGCTCACCCAAGCCCAAGGCAGGGTGTCACCCCTGCCTGCCCATACTTTAATCTGCAGCCTCTGTGTTTCAGAAGCGTTGGCTGGCCACAGGTTAGATTTGAGCACAGCTCCAGCGTTCTGTGACCTCACATCAGCGGTTCATTCGTCCCTCTCAGAGCTGTGGCCTTCAGCATTCAAAGGCGCTTCTCCCTGCTCCATGCTGCCCCCTCCCCTGTGATGTCCCAAATGATGTCAAGTCAGGCAGATGACACCCAAATCAAAGTGAAGCTGACCAGCCAGCCTCCGGAGGCCCTCGCTGCATTTGTGAGGGAGGGGGAGGTGGGAAGATGAGGGTTTGAATTTGGGAGCGGGGAGAAGGAGGGGCATGGTGGAAGGGAGTCTGTGAAGCTCAAAGATAGTTTTGGGGGTCCCTCACGCCCTGGCCACGCCAGCAGTGCTGTGCACGCCAAAAGCTGGCTTCCCCACACAGGGTCTCCTGGCACACACTGCATGTCCCCTTGTGGTTTGATGTCCCCACCTTGACTTGCTGTCCTCTGGTTCTCTGCTCCCTCTGCAG
Seq C2 exon
ACTGTGGGCTGCGGTCATTCACGAGACAGGCTCGTGTTGTTGGGGGCACGGATGCGGATGAGGGCGAGTGGCCCTGGCAGGTAAGCCTGCATGCTCTGGGCCAGGGCCACATCTGCGGTGCTTCCCTCATCTCTCCCAACTGGCTGGTCTCTGCCGCACACTGCTACATCGATGACAGAGGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149418:ENST00000278742:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.5)
A:
NA
C2:
PF0008921=Trypsin=PU(21.3=79.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGTCGTCACTTGTACCA
R:
CTGAATCCTCTGTCATCGATGTAGC
Band lengths:
310-1191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains