HsaINT0159712 @ hg19
Intron Retention
Gene
ENSG00000149418 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:11344]
Coordinates
chr11:130068842-130070032:+
Coord C1 exon
chr11:130068842-130068964
Coord A exon
chr11:130068965-130069845
Coord C2 exon
chr11:130069846-130070032
Length
881 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
GTTCTCTGCTCCCTCTGCAGACT
3' ss Score
10.65
Exon sequences
Seq C1 exon
TGAACGTCGTCACTTGTACCAAACACACCTACCGCTGCCTCAATGGGCTCTGCTTGAGCAAGGGCAACCCTGAGTGTGACGGGAAGGAGGACTGTAGCGACGGCTCAGATGAGAAGGACTGCG
Seq A exon
GTGAGCAGGGCATCCGAGTACGGTTGTGCAGGTTGTTCACTGTGTGAAGTGCCCACCAGAGGGTGCACCTGGAGGTGCAATCCCGCCAGCACCTCACTTAGCAGCTCTGTGCTTGGGTGAGAGGGTGTGTCTCCTGGAGGAAAGGATAGCCTTGCCAGTTGGCATGAAGGCACCACCCCACGGGCTGGCTCTGGTCTTGGAGAAAGGCCCGTACGGCCAGCATCTCAGCGCCTCTGTAGCATGGCGGGGTCGTGGCTGCAGTGCGTTGCTGGCCCCTGCTGTGTAGACACAGCTGTGGAGCAGTAGCCTGGAGAAGAGCGGCCCAGCTCACCCAAGCCCAAGGCAGGGTGTCACCCCTGCCTGCCCATACTTTAATCTGCAGCCTCTGTGTTTCAGAAGCGTTGGCTGGCCACAGGTTAGATTTGAGCACAGCTCCAGCGTTCTGTGACCTCACATCAGCGGTTCATTCGTCCCTCTCAGAGCTGTGGCCTTCAGCATTCAAAGGCGCTTCTCCCTGCTCCATGCTGCCCCCTCCCCTGTGATGTCCCAAATGATGTCAAGTCAGGCAGATGACACCCAAATCAAAGTGAAGCTGACCAGCCAGCCTCCGGAGGCCCTCGCTGCATTTGTGAGGGAGGGGGAGGTGGGAAGATGAGGGTTTGAATTTGGGAGCGGGGAGAAGGAGGGGCATGGTGGAAGGGAGTCTGTGAAGCTCAAAGATAGTTTTGGGGGTCCCTCACGCCCTGGCCACGCCAGCAGTGCTGTGCACGCCAAAAGCTGGCTTCCCCACACAGGGTCTCCTGGCACACACTGCATGTCCCCTTGTGGTTTGATGTCCCCACCTTGACTTGCTGTCCTCTGGTTCTCTGCTCCCTCTGCAG
Seq C2 exon
ACTGTGGGCTGCGGTCATTCACGAGACAGGCTCGTGTTGTTGGGGGCACGGATGCGGATGAGGGCGAGTGGCCCTGGCAGGTAAGCCTGCATGCTCTGGGCCAGGGCCACATCTGCGGTGCTTCCCTCATCTCTCCCAACTGGCTGGTCTCTGCCGCACACTGCTACATCGATGACAGAGGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149418-ST14:NM_021978:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.5)
A:
NA
C2:
PF0008921=Trypsin=PU(21.3=79.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGTCGTCACTTGTACCA
R:
CTGAATCCTCTGTCATCGATGTAGC
Band lengths:
310-1191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)