RnoINT0153443 @ rn6
Intron Retention
Gene
ENSRNOG00000002145 | Tmprss7
Description
transmembrane serine protease 7 [Source:RGD Symbol;Acc:1304655]
Coordinates
chr11:60132549-60133682:+
Coord C1 exon
chr11:60132549-60132665
Coord A exon
chr11:60132666-60133510
Coord C2 exon
chr11:60133511-60133682
Length
845 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TGACGCTTCCTCTCCTAAAGGCT
3' ss Score
6.95
Exon sequences
Seq C1 exon
GCATCCCATGCACCAACAGGACCTTTAAATGTGGCAATGACATTTGCTTCAGAAAGCAAAATGCCCAATGCGATGGTATAGTGGACTGTCCAGACAGAAGTGACGAGGAGGGCTGCG
Seq A exon
GTGAGTAGAAATGGCTTCTCCTGATTCCTGCATTCCCTCTTCCTTTATCCATTGTCCATTTTCATTGCCTCTGATTATCATTCCTCAGATAAAGACTGCTTGGTATCTAGGAAAGAATAATATTTATTAGTTTACTGGCTCTGATGTTGCTCCAAAGAAATACAAGCCCCAAAGGGTTGTTCCGTCTTCCTTCTTGATAATAGGAGGTAACAGGATGTTTTCTAGTAATCCCAATCAAGGAAGAAATCTCCTGTGTGTAGAGCAGTGGAACCCGGTGAATGACCTTTAGTTATGAGTCTTGACAAGAGCAATATTGAGATTCTTTATGCCATGTGTTCTTCTTAGGTGTTCTCTCATTAATAATGTCAGTCAGCCTTATTGAGGTCATTTACACTGAAAAGAAAGAGCTCTGATGATTAGTACATGTGCACATGTCTTGGACTTAGAAGGTCTCTCCCAAATGCCTTCCGTCAAACCAGCACACTTCGAAAACACTCTCAGCTCTTTTATAGTTGAAACCTCCTGCTTCCTTTCCACATAGCAACCTAACTCCATGGGCTGCTGATTATGTGAGTCCAGTTGTTACCACAGGGCCTTCCTCCACAGCATGCATCAGTGTGTAGACTCCAAGTCAGGGCATGCTCTCAGCAACAAAGGCGTGGTGCTGTGTTGGCGCTGGTTCCAGACCTATAGATTTCCTCGCTGCCAGATAACCAGCAGACTTCCAACTGTTGGCTTGATGAGTCAGTTCCCAACCCAGCCATAAATGTGATTAAATTTCCAGTTCTCTCTGTGTGTGTTTGTGTTTCTGTCTATTAAGTCATATGACGCTTCCTCTCCTAAAG
Seq C2 exon
GCTGTAGCAGAAGTTCTCCCTTCCTTCACCGCGTCGTTGGGGGTTCCGATTCCCAGGAGGGAACCTGGCCATGGCAGGTCAGCCTCCACTTTGTTGGATCAGCCCACTGTGGTGCCTCAGTCATCTCCAGAGAGTGGCTTCTCTCTGCAGCCCACTGTTTCCACGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002145:ENSRNOT00000045521:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.5)
A:
NA
C2:
PF0008921=Trypsin=PU(20.0=79.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCACCAACAGGACCTTT
R:
TTTCCGTGGAAACAGTGGGC
Band lengths:
281-1126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]