GgaALTD1002098-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000001226 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr17:429920-431487:-
Coord C1 exon
chr17:431402-431487
Coord A exon
NA
Coord C2 exon
chr17:429920-430138
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
TTGCTGTCCCCTCACTGCAGAAC
3' ss Score
10.26
Exon sequences
Seq C1 exon
CAACCTGGTGACCTGCTCCAAGCTAGCGCAGTCGCAGGCATCCCTGCGCTCAGCCTCCTCAGTGGGCTCCGTACGGGGTGACGAAG
Seq A exon
NA
Seq C2 exon
AACAAGAGGCTGATGTGGAGGCGGAGGACCATGACCTGGCTGGGCAGGGGAGCTTCAAGCTGGAGGGCTCGTGGCTGAAGCTGCGCCAGTTCCACGGACTGATTGTCAAACGCTTCCACTGTGCCAAGCGCAACACCAAGGCCCTCTTCTCTCAGATCCTCCTGCCTGCCTTCTTTGTCTGCGTGGCCATGACTGTGGCACTCTCCGTGCCTGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001226-39-42,40-42-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=NA C2=0.189
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCAGTGGGCTCCGTAC
R:
GAGAAGAGGGCCTTGGTGTTG
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]