GgaINT1005116 @ galGal4
Intron Retention
Gene
ENSGALG00000001226 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr17:429920-431487:-
Coord C1 exon
chr17:431321-431487
Coord A exon
chr17:430139-431320
Coord C2 exon
chr17:429920-430138
Length
1182 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCGT
5' ss Score
8.44
3' ss Seq
TTGCTGTCCCCTCACTGCAGAAC
3' ss Score
10.26
Exon sequences
Seq C1 exon
CAACCTGGTGACCTGCTCCAAGCTAGCGCAGTCGCAGGCATCCCTGCGCTCAGCCTCCTCAGTGGGCTCCGTACGGGGTGACGAAGGTGGGGCTTATTCCGAGTTCTTTGGGGATTACTCTCCGTTGTTTGACAATCCTCAGGACCCTGATAACATCAGTCTGCAAG
Seq A exon
GTTCGTAGAACCGCACAGCGGTGTGCTGCTTATGCACTGTGACGGAGGTGCTCTGGAGGTGCTCTGGGATGGGGAGGATGGCTGCTCCGAGGCAGGAATGGAGCTGGCTCTCCAAGGGACATGGTGCCTGGTGCACTGGAGATTGAGACCGTGCTGGCTCAGCTGAGCCCCACGGGGCTGAGCTTGCGTTCCAACAGATGATGTGTCCAGGGAGCCTGTGCAGAGAAAGAGAAGGGGAGGTGCAGAGCCTGCAGCCTGGGGACAGGGCCGGGGGGGACGGCTGGAGACTGATGCTTTTAGCCAGAGTTTGTGCCCCTGAGCTGGCGGGCCCCGTGCTGAGACGCAGAGCTGGCAGGCTCACGGGCAGGTGGAGGCACGCCGGCGTTAGCCCTTCCCTTTGTCTCTCTCAGACCCCGGGGGTGCTGACCTGCACACTCACTCACTAACACGCTGCTTGCAATGGTGGCCGCTGGGGGAGCGGCGCTGTCCTGCACAGGGCACGCTGATCCCATGGCTGAGCTGCTGAGTTTCTCCTCTTGGCCCTCCAGTGTGGAGTTGTCTTCCAGAGAGTGACTTTGCCCTCCAGCCCCTGGCATGGGTTCAAGGCCATCCCTGCCCGGATGCTCAAATTGCACAAGCACAGAGCGTGCAGACAGAAGCCCGAAGGCAACTGTTTTATTTACAAATCCTTTTCTGGGTTATCCCACCAGTTCTTGTCATGATTAATTTATTGCTGTGACACTCTCCCTCCCCTGCCAGGGCTGCAGATTGCTCTGAGCGTTGCTGAATTTGGGTCAGCGGGAGGCAGAGCAGCAGCAGTGTGGCATTGCAGCTGTGCTCCTCGGGTCCCAGCTCTGTGTTCGCTGGGTCCCCACACATGTGACCCGTTCCCACTCTTCCTGATCAGCGCTAACCACTCTGGGCTGGCTGCAGCCAGTGGGAAGATGGAAGGGTTCTGCCAAAAAGCACCACTTTTGTTTCTTAAAAACTATTGTCACAGTTTCCCATTTTGGGCCATGAGAAACCCACCGGCCAGCCAACTTGCTTCATGCCATGGTCATACCGTGGCTCAGTGGCCCATCAGGTTGGCTGTGCCCAGTTCAGTGCCAGGGCAACTGCCAGCCAGGGCAGGTGCGGGACCCCTGGGCTCACACCCCGCTCTTTGCTGTCCCCTCACTGCAG
Seq C2 exon
AACAAGAGGCTGATGTGGAGGCGGAGGACCATGACCTGGCTGGGCAGGGGAGCTTCAAGCTGGAGGGCTCGTGGCTGAAGCTGCGCCAGTTCCACGGACTGATTGTCAAACGCTTCCACTGTGCCAAGCGCAACACCAAGGCCCTCTTCTCTCAGATCCTCCTGCCTGCCTTCTTTGTCTGCGTGGCCATGACTGTGGCACTCTCCGTGCCTGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001226:ENSGALT00000040507:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=NA C2=0.189
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGACCTGCTCCAAGCTA
R:
GACAAAGAAGGCAGGCAGGAG
Band lengths:
342-1524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]