MmuINT0007805 @ mm10
Intron Retention
Gene
ENSMUSG00000026944 | Abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:MGI Symbol;Acc:MGI:99606]
Coordinates
chr2:25441875-25442397:+
Coord C1 exon
chr2:25441875-25442111
Coord A exon
chr2:25442112-25442190
Coord C2 exon
chr2:25442191-25442397
Length
79 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGAA
5' ss Score
0.93
3' ss Seq
ACCTCTGCCTCTCTGCACAGAGG
3' ss Score
10.06
Exon sequences
Seq C1 exon
ATGTGAAGGAGTCCCGGAAGGATGTGCTGCCTGGGGCAGAGGGCCTGACAGCTGTGGGGGGTCAAGCTGGCAACCTGGCTCGGTGCTCAGAGCTGGCACAGTCACAGGCATCGCTGCAGTCTGCATCCTCTGTGGGCTCTGCCCGTGGGGAGGAGGGCACCGGCTACTCTGATGGCTACGGTGACTACCGTCCCCTCTTTGACAACTTGCAGGACCCAGACAATGTCAGCTTACAAG
Seq A exon
GTGGAAGCCAATGGGGAAACTGGGGAGGGTCCAGAAGGGTGGCGTGGGACTGGCTATTTACCTCTGCCTCTCTGCACAG
Seq C2 exon
AGGCAGAGATGGAGGCCCTGGCTCAGGTGGGCCAGGGCAGCCGCAAACTCGAGGGCTGGTGGCTGAAGATGCGGCAGTTCCATGGGCTCCTGGTGAAGCGCTTCCACTGTGCTCGTCGGAACTCCAAAGCTCTCTGCTCTCAGATTCTGCTGCCTGCCTTCTTTGTCTGTGTGGCCATGACTGTGGCGTTGTCTGTCCCTGAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026944:ENSMUST00000102919:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.287 A=NA C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACCCAGACAATGTCAGC
R:
GGCAGCAGAATCTGAGAGCAG
Band lengths:
182-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types