GgaALTD1002432-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009474 | ACTN1
Description
alpha-actinin-1 [Source:RefSeq peptide;Acc:NP_989458]
Coordinates
chr5:27569553-27571230:+
Coord C1 exon
chr5:27569553-27569615
Coord A exon
NA
Coord C2 exon
chr5:27571072-27571230
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
ATGACTCTCTTGTTCTCCAGGGA
3' ss Score
10.02
Exon sequences
Seq C1 exon
AAGACTGGTATGATGGATTGTGAAGATTTCCGAGCCTGCCTTATCTCCATGGGTTACAATATG
Seq A exon
NA
Seq C2 exon
GGAGAGGCAGAGTTTGCCCGCATCATGAGCATTGTCGATCCTAATCGCATGGGTGTAGTGACGTTCCAGGCCTTCATTGACTTCATGTCCCGGGAAACAGCAGATACAGATACTGCTGACCAGGTTATGGCTTCTTTCAAGATCCTGGCTGGAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474-55-42,56-42-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(26.2=100)
A:
NA
C2:
PF134991=EF-hand_7=PD(32.9=52.8),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCCTGCCTTATCTCCATG
R:
GCCAGGATCTTGAAAGAAGCCA
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]