RnoALTD0001735-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000056756 | Actn1
Description
actinin, alpha 1 [Source:RGD Symbol;Acc:70907]
Coordinates
chr6:103378008-103379376:-
Coord C1 exon
chr6:103379314-103379376
Coord A exon
NA
Coord C2 exon
chr6:103378008-103378166
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
GTGTTGGCTGTTTCCTCTAGGGA
3' ss Score
9.55
Exon sequences
Seq C1 exon
AAGACGGGCATGATGGACACGGATGATTTCCGCGCCTGCCTTATCTCCATGGGTTACAACATG
Seq A exon
NA
Seq C2 exon
GGAGAGGCAGAATTTGCCCGGATCATGAGCATTGTAGACCCAAACCGCTTGGGGGTAGTGACGTTCCAGGCCTTCATCGACTTCATGTCCCGAGAGACGGCTGACACAGATACAGCGGATCAGGTCATGGCTTCCTTCAAGATCCTGGCTGGAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056756-38-35,39-35-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(37.7=90.9)
A:
NA
C2:
PF138331=EF-hand_8=PD(58.5=58.5),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGATGGACACGGATGAT
R:
TCCAGCCAGGATCTTGAAGGA
Band lengths:
210-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]