GgaALTD1004788-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:55049-55713:-
Coord C1 exon
chr16:55601-55713
Coord A exon
chr16:55554-55600
Coord C2 exon
chr16:55049-55219
Length
47 bp
Sequences
Splice sites
5' ss Seq
GGGGCAAGT
5' ss Score
1.9
3' ss Seq
ACTTTCTGGTGCTCCCACAGGGC
3' ss Score
10.29
Exon sequences
Seq C1 exon
GGGGGGAACTCGTGGAGCGGGAGCTGTCGGTGCCGCTGGTTCTGTCCCAGTGGGTGCTGCAGCTGCAGAAGAGTGCGCGGTTCTTCGTGCCCGGAGCGCCCTACACCCTCCTG
Seq A exon
GTGAGCACGTGTGCAAATCCCCCTCATGCAAAGGGGGAATGCTTGGG
Seq C2 exon
GGCCGAGTGCTGCAGGCTGGGGGGGGCACAGCCCCGGGGGTCCCCATCAGAGTGACAGTGGGGGTGACTGGAGCCCCTGCACCACCCCTCATAGAGCTGCAGGCAGACAACAGTGGGGACATCGCCGTCCCCATCAATGTCCCCAAAGGAGCCACCAGGATGGAGCTGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646-11-11,12-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTTCTGTCCCAGTGGGT
R:
CCACTGTCACTCTGATGGGGA
Band lengths:
139-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]