GgaEX1012072 @ galGal4
Exon Skipping
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:54724-55713:-
Coord C1 exon
chr16:55601-55713
Coord A exon
chr16:55049-55219
Coord C2 exon
chr16:54724-54909
Length
171 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTGGTGCTCCCACAGGGC
3' ss Score
10.29
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
GGGGGGAACTCGTGGAGCGGGAGCTGTCGGTGCCGCTGGTTCTGTCCCAGTGGGTGCTGCAGCTGCAGAAGAGTGCGCGGTTCTTCGTGCCCGGAGCGCCCTACACCCTCCTG
Seq A exon
GGCCGAGTGCTGCAGGCTGGGGGGGGCACAGCCCCGGGGGTCCCCATCAGAGTGACAGTGGGGGTGACTGGAGCCCCTGCACCACCCCTCATAGAGCTGCAGGCAGACAACAGTGGGGACATCGCCGTCCCCATCAATGTCCCCAAAGGAGCCACCAGGATGGAGCTGAGC
Seq C2 exon
GTGGAGGCAGGACAGCCCGGTGTCCCCCCAGCACGGGCACAGCTGTTGGTGACCCCGATGGCAGCGGTGTCGGGGCGGTTCCTGGTGCTGGGGGGTCCCCGGGGGTCACTCCGTCCCGGGGAAGAGCTGCGGCTGCAGCTGCACCATATGGGGCCGCCCCCCACCCCGCAGCGCTTCCACATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646-'11-13,'11-11,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.070 C2=0.339
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF077039=A2M_N_2=PU(23.9=53.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTCCCAGTGGGTGCTG
R:
GATGTGGAAGCGCTGCGG
Band lengths:
257-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]