DreEX6040189 @ danRer10
Exon Skipping
Gene
ENSDARG00000038424 | si:dkey-8k3.2
Description
si:dkey-8k3.2 [Source:ZFIN;Acc:ZDB-GENE-100922-98]
Coordinates
chr16:16785164-16786172:-
Coord C1 exon
chr16:16786060-16786172
Coord A exon
chr16:16785712-16785873
Coord C2 exon
chr16:16785164-16785325
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTATTTATGTTTTTGTCTAGGTC
3' ss Score
10.23
5' ss Seq
CAGGTTAAT
5' ss Score
4.7
Exon sequences
Seq C1 exon
GTGGTGAGGTACAGGAATCTGAAACCTTCCTTCCTGTTGTTTTGAGTCGGTACAATGTGGATCTGTCTCGGACAAGACTGTTCTACACACCTGCATTTCCTTTACAAGCAGTG
Seq A exon
GTCACAGTTCGTCACCCAAATGGTTCTCCTGCTGAAGGCGTTCAAGTTAAATTAGATGTCTCGAACTCTAAAGAAAAGTCTACAATTGTTACTACTAATAAAGAAGGAATCGCATTTTACAGCTTCAACCTAGACGGAAAACCACCTTCAGTTTTAGTGCAG
Seq C2 exon
GCAACTGTGGATAATGCCAAGTCAATAAGAGCTGTGCATCCGATGAAATCCACAAGCTTCCTTTATATGAGTGTGACAAATAAAGTCTTATCATCAGGACAGTTTCTGGAAGTCTCATTTTACCCCAAAGGTAATCCAGAAGATGGGCAAATATATTATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038424-'12-10,'12-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.127 C2=0.000
Domain overlap (PFAM):
C1:
PF0236911=Big_1=PU(4.2=7.7)
A:
PF0236911=Big_1=FE(75.0=100)
C2:
PF0236911=Big_1=PD(19.4=25.5),PF077039=A2M_N_2=PU(23.2=60.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGAGGTACAGGAATCTGA
R:
CATCTTCTGGATTACCTTTGGGGT
Band lengths:
258-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]