MmuEX6077191 @ mm10
Exon Skipping
Gene
ENSMUSG00000073418 | C4b
Description
complement component 4B (Chido blood group) [Source:MGI Symbol;Acc:MGI:88228]
Coordinates
chr17:34739936-34740644:-
Coord C1 exon
chr17:34740529-34740644
Coord A exon
chr17:34740267-34740443
Coord C2 exon
chr17:34739936-34740121
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTCTAACTGTCTCCTCCAGGCT
3' ss Score
9.56
5' ss Seq
TTGGTAGTG
5' ss Score
-1.33
Exon sequences
Seq C1 exon
GAGGAGAGATGGAGGAGGCAGAACTCACGTCCTGGCGCTTTGTATCATCTGCCTTCTCCTTGGATCTCAGCCGCACTAAGAGGCATCTTGTGCCTGGGGCCCACTTCCTGCTGCAG
Seq A exon
GCTCTGGTCCAAGAAATGTCAGGCTCTGAAGCCTCCAACGTTCCTGTTAAAGTCTCTGCCACATTGGTGTCAGGCTCTGACTCCCAAGTCCTTGACATTCAACAGAGCACCAATGGAATTGGCCAAGTCAGCATTTCCTTCCCCATCCCACCAACTGTCACAGAACTTCGACTCTTG
Seq C2 exon
GTGTCTGCGGGCTCCCTCTACCCAGCCATAGCCAGGCTCACCGTGCAAGCCCCACCTTCAAGAGGCACTGGCTTTCTTTCTATTGAGCCACTAGACCCTCGGTCCCCTAGTGTGGGGGACACCTTTATCCTAAACCTTCAACCTGTGGGCATCCCTGCACCTACCTTCTCTCATTACTACTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073418-'14-11,'14-9,16-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF077039=A2M_N_2=PU(25.7=58.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCTTTGTATCATCTGCCT
R:
TGAGAGAAGGTAGGTGCAGGG
Band lengths:
256-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types