GgaEX7012074 @ galGal4
Exon Skipping
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:54066-55219:-
Coord C1 exon
chr16:55049-55219
Coord A exon
chr16:54724-54909
Coord C2 exon
chr16:54066-54251
Length
186 bp
Sequences
Splice sites
3' ss Seq
GTGGTGTCTGTGACCCTCAGGTG
3' ss Score
7.83
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GGCCGAGTGCTGCAGGCTGGGGGGGGCACAGCCCCGGGGGTCCCCATCAGAGTGACAGTGGGGGTGACTGGAGCCCCTGCACCACCCCTCATAGAGCTGCAGGCAGACAACAGTGGGGACATCGCCGTCCCCATCAATGTCCCCAAAGGAGCCACCAGGATGGAGCTGAGC
Seq A exon
GTGGAGGCAGGACAGCCCGGTGTCCCCCCAGCACGGGCACAGCTGTTGGTGACCCCGATGGCAGCGGTGTCGGGGCGGTTCCTGGTGCTGGGGGGTCCCCGGGGGTCACTCCGTCCCGGGGAAGAGCTGCGGCTGCAGCTGCACCATATGGGGCCGCCCCCCACCCCGCAGCGCTTCCACATCCTG
Seq C2 exon
GCAATGGCCCGTGGGAGGGTGCTGGTGGCCCACACGGTGGCCTCGCAGGTGACGCTGACAGAGGTGGCACTGCCGGTGACAGCAGACATGGCCCCATATCTCCACGTCGTCGCCTTCTTCCTGAGTGGGGGAAATGTGGTGGCTGCCACGTGGGGGGGGGCTGTGCGGGGAGGCTGCGATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.339 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
PF077039=A2M_N_2=PU(23.9=53.2)
C2:
PF077039=A2M_N_2=FE(44.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCATCAGAGTGACAGTGG
R:
AAGGCGACGACGTGGAGATAT
Band lengths:
247-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]