GgaEX1012073 @ galGal4
Exon Skipping
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:53752-54909:-
Coord C1 exon
chr16:54724-54909
Coord A exon
chr16:54066-54251
Coord C2 exon
chr16:53752-53907
Length
186 bp
Sequences
Splice sites
3' ss Seq
ACATCCCCGTGTCCCTGCAGGCA
3' ss Score
11.02
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGGAGGCAGGACAGCCCGGTGTCCCCCCAGCACGGGCACAGCTGTTGGTGACCCCGATGGCAGCGGTGTCGGGGCGGTTCCTGGTGCTGGGGGGTCCCCGGGGGTCACTCCGTCCCGGGGAAGAGCTGCGGCTGCAGCTGCACCATATGGGGCCGCCCCCCACCCCGCAGCGCTTCCACATCCTG
Seq A exon
GCAATGGCCCGTGGGAGGGTGCTGGTGGCCCACACGGTGGCCTCGCAGGTGACGCTGACAGAGGTGGCACTGCCGGTGACAGCAGACATGGCCCCATATCTCCACGTCGTCGCCTTCTTCCTGAGTGGGGGAAATGTGGTGGCTGCCACGTGGGGGGGGGCTGTGCGGGGAGGCTGCGATGAGCAG
Seq C2 exon
GTGCAGGTGAAGGTCCCTCCACGTGGGACCACCCTTCGCCCTCAGGACCCACTGAAGGTGACAGTGACAACGGGGACTCCAGTGACAGTGGCCATTGGGGCCATCGACACCACAGTGCTGAATCTGGAACCACGGCACCGCCTGAACACTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646-'14-15,'14-14,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.339 A=0.016 C2=0.442
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PU(23.9=53.2)
A:
PF077039=A2M_N_2=FE(44.2=100)
C2:
PF077039=A2M_N_2=PD(29.7=78.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTGGTGACCCCGATG
R:
CAATGGCCACTGTCACTGGAG
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]