GgaALTD1005973-2/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000008417 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr6:23857402-23873947:+
Coord C1 exon
chr6:23857402-23857474
Coord A exon
chr6:23857475-23857506
Coord C2 exon
chr6:23873828-23873947
Length
32 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TCCTTCTATCTTTTTCTTAGGAA
3' ss Score
9.94
Exon sequences
Seq C1 exon
GCCAGTGACCCAAGTACCTATGAACTGATCCAGAAAATACAGAGGCTACAGAAGCAACTTATCAGCAAGACAG
Seq A exon
GTGAAGTGATAGAAAAAGAACTGCTCCTACAG
Seq C2 exon
GAAAAGGAGAAATTATATGTGGAATTGAAGCATGTCCTGGCCCGGCAGCCGGGACCTGAAGCCGCAGAACAGTTACAGCTCTACCGACACACTCTCCGAGAGAAGACCAAACAGCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008417-20-19,21-19,22-19-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTGACCCAAGTACCTATG
R:
GGGCCAGGACATGCTTCAATT
Band lengths:
116-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]