HsaALTD1015453-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000120051 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr10:104406694-104447817:+
Coord C1 exon
chr10:104406694-104406766
Coord A exon
chr10:104406767-104406793
Coord C2 exon
chr10:104447698-104447817
Length
27 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
3' ss Seq
CTGGTTCTGCTCTCCACTAGGAA
3' ss Score
9.49
Exon sequences
Seq C1 exon
CGACCCCAATGCATATGAGCTGATACAGAAAATTCACACCCTGCAGAAGCGTCTCATCAGCAAGACTGAAGAG
Seq A exon
GTGGTTGAAAAAGAGCTGCTCCTCCAG
Seq C2 exon
GAAAAGGAGAAACTCTACATGGAACTAAAGCACGTCTTGGCCCGCCAGCCTGGACCTGAGGCTGCGGAACAGCTGAAGCTGTACCGACGCACGCTGCATGACAAGAAGCAGCAGCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120051-32-41,33-41,34-41-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.150
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCCCAATGCATATGAGCT
R:
GGGCCAAGACGTGCTTTAGTT
Band lengths:
116-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains