GgaALTD1007328-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000012545 | CYTIP
Description
cytohesin 1 interacting protein [Source:HGNC Symbol;Acc:HGNC:9506]
Coordinates
chr7:35722710-35723137:-
Coord C1 exon
chr7:35723088-35723137
Coord A exon
NA
Coord C2 exon
chr7:35722710-35722764
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
TTCTGAGTGTTTTTTTGCAGACA
3' ss Score
7.77
Exon sequences
Seq C1 exon
CTCGCTCTGACCAGATCCAGCTCCCTGGGGGACTGCTCCCGGCCACAGAG
Seq A exon
NA
Seq C2 exon
ACACTTCATTTCTATATTCAAAGAAGATAAAGAGACATTTGGGTTTGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012545-3-2,4-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0059519=PDZ=PU(17.4=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGACCAGATCCAGCTCCC
R:
TGGATTTCAAACCCAAATGTCTCT
Band lengths:
100-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]