GgaEX0018953 @ galGal4
Exon Skipping
Gene
ENSGALG00000012545 | CYTIP
Description
cytohesin 1 interacting protein [Source:HGNC Symbol;Acc:HGNC:9506]
Coordinates
chr7:35722710-35725457:-
Coord C1 exon
chr7:35725230-35725457
Coord A exon
chr7:35723088-35723137
Coord C2 exon
chr7:35722710-35722764
Length
50 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTTTCTGCTTGCAGCTC
3' ss Score
11.9
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
CCCGCTTTCCGTTTTCATACTTTCTGATTGCTCAGGGAGGAGAGTGCACCCGAACCGCGCCGTGCTTTGCGATGCCGCGCTGAGCGCCCTTCCAGCAGGATGTCTGTGCGGCGGCTCGCCCAGCACGGCCAGCGCTCCGGCACTGGGGATCGGGGTGTGCAGATGGACGGCAGGCGGCTGCAGCAGCTGGTCAGCACGGTGGGGACGCTGCCGAGGAGCCGCAAGCAG
Seq A exon
CTCGCTCTGACCAGATCCAGCTCCCTGGGGGACTGCTCCCGGCCACAGAG
Seq C2 exon
ACACTTCATTTCTATATTCAAAGAAGATAAAGAGACATTTGGGTTTGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012545_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.779 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0059519=PDZ=PU(17.4=78.9)
Main Skipping Isoform:
ENSGALT00000020489fB6603
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGGGGTGTGCAGATGGA
R:
TGGATTTCAAACCCAAATGTCTCT
Band lengths:
135-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]