HsaEX6016098 @ hg19
Exon Skipping
Gene
ENSG00000115165 | CYTIP
Description
cytohesin 1 interacting protein [Source:HGNC Symbol;Acc:9506]
Coordinates
chr2:158290882-158300654:-
Coord C1 exon
chr2:158300359-158300654
Coord A exon
chr2:158291210-158291259
Coord C2 exon
chr2:158290882-158290936
Length
50 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTTGTGTTTTTCAGCTT
3' ss Score
11.33
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AGAGGTCACATGGGCTCTTTCTGCTTTGCTACTTTTGATTACTTGTCACAGTTGTACTTTTAGCTTCCCCCATCCTGCAAGGCCACTCAACCATGTGCTAGCTGGAGTGATCTTTATTCACAATGTCTTTACAAAGGCTCCTGCAACACAGCAGCAATGGCAATTTGGCGGACTTCTGCGCTGGGCCAGCGTATAGCTCTTACTCCACACTCACCGGCAGCCTTACGATGGACGATAATAGAAGGATTCAAATGCTAGCAGACACGGTGGCTACTCTGCCTCGGGGACGAAAGCAG
Seq A exon
CTTGCTTTGACCAGATCAAGTTCTTTAAGTGACTTTTCCTGGTCTCAAAG
Seq C2 exon
AAAGCTTGTTACTGTGGAGAAGCAGGATAATGAAACATTTGGATTTGAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115165-'5-12,'5-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.009 C2=0.132
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0059519=PDZ=PU(18.4=84.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTACTCCACACTCACCG
R:
TCATTATCCTGCTTCTCCACAGT
Band lengths:
134-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)