HsaEX6016098 @ hg38
Exon Skipping
Gene
ENSG00000115165 | CYTIP
Description
cytohesin 1 interacting protein [Source:HGNC Symbol;Acc:HGNC:9506]
Coordinates
chr2:157430860-157444142:-
Coord C1 exon
chr2:157443847-157444142
Coord A exon
chr2:157434698-157434747
Coord C2 exon
chr2:157430860-157430962
Length
50 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTTGTGTTTTTCAGCTT
3' ss Score
11.33
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AGAGGTCACATGGGCTCTTTCTGCTTTGCTACTTTTGATTACTTGTCACAGTTGTACTTTTAGCTTCCCCCATCCTGCAAGGCCACTCAACCATGTGCTAGCTGGAGTGATCTTTATTCACAATGTCTTTACAAAGGCTCCTGCAACACAGCAGCAATGGCAATTTGGCGGACTTCTGCGCTGGGCCAGCGTATAGCTCTTACTCCACACTCACCGGCAGCCTTACGATGGACGATAATAGAAGGATTCAAATGCTAGCAGACACGGTGGCTACTCTGCCTCGGGGACGAAAGCAG
Seq A exon
CTTGCTTTGACCAGATCAAGTTCTTTAAGTGACTTTTCCTGGTCTCAAAG
Seq C2 exon
TCTTACAGGCCCCAGAATCAGAATGCCTGCTCCTCGGAAATGTTCACTTTGATATGCAAAATACAGGAGGACAGCCCAGCTCACTGTGCTGGCCTGCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115165_MULTIEX1-4/6=2-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=0.009 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0059519=PDZ=PU(36.8=95.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTACTCCACACTCACCG
R:
CATTTCCGAGGAGCAGGCATT
Band lengths:
143-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains