MmuEX6101404 @ mm10
Exon Skipping
Gene
ENSMUSG00000026832 | Cytip
Description
cytohesin 1 interacting protein [Source:MGI Symbol;Acc:MGI:2183535]
Coordinates
chr2:58151114-58160495:-
Coord C1 exon
chr2:58159882-58160495
Coord A exon
chr2:58151714-58151763
Coord C2 exon
chr2:58151114-58151168
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTTTATATTTTTCAGCTT
3' ss Score
9.31
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AATTCTGTTTTGAGTACCCGTAGCCATAGAGTATCAAACTCTATGTTCCGGCTGTTTGAGGGAGGAAAAGTACACTGATTTTTTTCTTTTTCTTTTTTTTTTTTTTTAATTGTAGAAAAGGAACGCAAGGTTCTCTCAGGAGCACTGGAGAGTAGGAGTGACCTCCTCTATAGGCTTTGTGCAACAGTGTCTCAAACCACAGCAGTCACATGGGTTCTGTTGGCTTTGCTACTTTTTCGACTGCGTGTCAGAGGGCTGTGCATTTCGCTTCCTCCCTCCTGCAAGGCCAGGGAACCATGTGTTGGCGGGATTAATCTTTGCCCACAATGTCTCTGCAAAGGTTTCTGCAGCGGCAGGGCAGCAATGGCAATTTGGAGTACTGTGCTGACTCTGCCTACGGCTCCTACTCCGTCCTCACGGGCCAGCTCACGATGGAAGACAACCGAAGGATTCAAGTGCTGGCAGACACTGTAGCTACTTTGCCCCGGGGACGAAAGCAG
Seq A exon
CTTGCGTTGGCCAGATCAAGCTCTTTGGGTGATTTTTCCTGGTCTCAAAG
Seq C2 exon
GAAGGTTGTTACTGTGGAAAAGCAGGACAATGGAACATTTGGATTTGAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026832-'6-11,'6-10,8-11
Average complexity
S
Mappability confidence:
89%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0059519=PDZ=PU(18.4=84.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCTACTCCGTCCTCAC
R:
TCCATTGTCCTGCTTTTCCACA
Band lengths:
136-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types