DreEX0002076 @ danRer10
Exon Skipping
Gene
ENSDARG00000061717 | CABZ01075242.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4K6]
Coordinates
chr9:5321983-5323244:+
Coord C1 exon
chr9:5321983-5322202
Coord A exon
chr9:5322616-5322665
Coord C2 exon
chr9:5323190-5323244
Length
50 bp
Sequences
Splice sites
3' ss Seq
GGATTTGTTTTCATTTTCAGTTG
3' ss Score
9.29
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
CACTGATGCCTGCAGTTGTGTGCAGCGCTTCTGTGAATGAGGCATGATGACATCCAATAGGAACTTTAAAATGCCTTTAAAACAGATGAGCAGCCTGGACAGCTACATAATCGACAGCTCTCAAAAGAAGAGAAGCATACTGTGGCGACAGCGCTCTTTCAGCAGTCCCAAAAATCTGAACACTGAAGGGATGAAAGGCAGGACATTGTCACAGAGTCAG
Seq A exon
TTGGCCAGAACACACTCAAATTCACTGGTGGATTATACTGATCCTCAGAG
Seq C2 exon
AACAATGGTTGTACTGGAGAAACAAGACAATGAAGTGTTTGGATTCGAAGTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061717-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.322 A=0.176 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0059519=PDZ=PU(18.4=84.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGCATACTGTGGCGACA
R:
TGAACTTCGAATCCAAACACTTCA
Band lengths:
145-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]