BtaEX6009697 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008329 | CYTIP
Description
Bos taurus cytohesin 1 interacting protein (CYTIP), mRNA. [Source:RefSeq mRNA;Acc:NM_001102243]
Coordinates
chr2:38682030-38691083:+
Coord C1 exon
chr2:38682030-38682244
Coord A exon
chr2:38690736-38690785
Coord C2 exon
chr2:38691029-38691083
Length
50 bp
Sequences
Splice sites
3' ss Seq
TGTGTACTTTTATTTTTCAGCTT
3' ss Score
9.95
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACTCAACCATGTGCTAGCTGGAGTTATCTTTACTCACAATGTCTTTACAAAAGCTCAGGAAACAGAACAGCAATGGCAATTTCATGGAGTACTGCGCTGGTCCAGGGCATAGCTCTTACTCCACACTCACAGGCAGTTTTACCGTGGATGATGATAATAGAAGGCTTCAAATGCTGGCAGATACTGTGGCTACTTTGCCTCGGGGAAGAAAGCAG
Seq A exon
CTTGCTCTGACAAGGTCAAGTTCTGTAGGTGACTTTTCCTGGTCTCAAAG
Seq C2 exon
AAAGCTTGTTATTGTGGAAAAACAAGATAATGGAACATTTGGATTTGAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008329-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0059519=PDZ=PU(18.4=84.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCCAGGGCATAGCTCTT
R:
TCTTGTTTTTCCACAATAACAAGCT
Band lengths:
146-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]