GgaEX0018953 @ galGal3
Exon Skipping
Gene
ENSGALG00000012545 | CYTIP
Description
NA
Coordinates
chr7:37858441-37861248:-
Coord C1 exon
chr7:37860961-37861248
Coord A exon
chr7:37858819-37858868
Coord C2 exon
chr7:37858441-37858495
Length
50 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTTTCTGCTTGCAGCTC
3' ss Score
11.9
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
GCCCTGGTGAGCTGCGAGAAGAGATTTATGTAACGTGCACCTAAACCACAAGTCACATGGCCCGCTTTCCGTTTTCATACTTTCTGATTGCTCAGGGAGGAGAGTGCACCCGAACCGCGCCGTGCTTTGCGATGCCGCGCTGAGCGCCCTTCCAGCAGGATGTCTGTGCGGCGGCTCGCCCAGCACGGCCAGCGCTCCGGCACTGGGGATCGGGGTGTGCAGATGGACGGCAGGCGGCTGCAGCAGCTGGTCAGCACGGTGGGGACGCTGCCGAGGAGCCGCAAGCAG
Seq A exon
CTCGCTCTGACCAGATCCAGCTCCCTGGGGGACTGCTCCCGGCCACAGAG
Seq C2 exon
ACACTTCATTTCTATATTCAAAGAAGATAAAGAGACATTTGGGTTTGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012545-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0059519=PDZ=PU(17.4=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGGGGTGTGCAGATGGA
R:
TGGATTTCAAACCCAAATGTCTCT
Band lengths:
135-185
Functional annotations
There are 0 annotated functions for this event