DreEX0035957 @ danRer10
Exon Skipping
Gene
ENSDARG00000000588 | grasp
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:ZFIN;Acc:ZDB-GENE-060312-30]
Coordinates
chr23:32289401-32309591:-
Coord C1 exon
chr23:32309205-32309591
Coord A exon
chr23:32301073-32301125
Coord C2 exon
chr23:32289401-32289503
Length
53 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTTGTGCTGAACAGAAC
3' ss Score
8.13
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
TTTTCTGAACGCAGCGAGTGTGTTCGCAGATGCTGCTGAGGCTGGAGACTGTTGCACAAGTCAAAAAGTGTAGGCTGCTTGCAAGTGGGTGAGGTGTCTTTTCACCCACACTCAGTACCATTCATCTCTTGCTCTTCATTCTTCTGTTCTGTCTAACTGAGTGACACGCGGACTATGAAAAATATGACTTTCCGTCGCGTAAAGAAGCTGAATTCAAGCGATCCGGACAGCGGGTCGTTGTGTCACGACAGTGGAGATATTTACTTCACGTCCTCTAAATCGGACAGCTGTGGGATTGTGAATCGTGGACCCTCAAACTCCACCGAGGTTTACAATTATAAAACCCTTGCTTACTCAGGAGGAACCCTACCGAGGAACTTCAAAAAG
Seq A exon
AACGGTGGGCTGCAGAAATGGAAGCCCCTCGCGCAGTCTCCAGAACCGCAAAG
Seq C2 exon
ACATACGGGCTTCATCACCAAAGTGAGAACTCCGTGGAGATGTGCACCTTTGTTTGCAAAGTCCACGAAGACAGTCCCGCTCTACTCGCAGGCCTTAAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000588_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=0.649 C2=0.000
Domain overlap (PFAM):
C1:
PF0149212=Gemini_C4=PU(37.7=36.6)
A:
PF0149212=Gemini_C4=FE(26.1=100)
C2:
PF0059519=PDZ=FE(39.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTGGACCCTCAAACTCCA
R:
ACAAAGGTGCACATCTCCACG
Band lengths:
139-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]