RnoEX0039788 @ rn6
Exon Skipping
Gene
ENSRNOG00000007346 | Grasp
Description
general receptor for phosphoinositides 1 associated scaffold protein [Source:RGD Symbol;Acc:70554]
Coordinates
chr7:142869752-142874145:+
Coord C1 exon
chr7:142869752-142870087
Coord A exon
chr7:142872089-142872138
Coord C2 exon
chr7:142874091-142874145
Length
50 bp
Sequences
Splice sites
3' ss Seq
CGGGCCATTTTCCCACCCAGGGC
3' ss Score
7.48
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
ACACGAGGCCCGCTGGGCTGGCGTCCCAAAGCCGTCGCCAACCCCATCTACCGGAGTGAGTGCGGCCTCCGAGGGGCGCCGGACGCCGGAGCCATGACCCTTCGCCGACTCAGGAAGCTGCAGCAGAAGGAGGAGGCGACGGCCGCGCCGGACCTCGCTGGCCGGGCTCCCGACTCCGAAGCCGCTCGCGCTGCGCCGACCCCCTCCGGCCCCCCGGCTGCCGCCGCTCCGCCAGGAGCCCCCGGGGACGAGCTGTACGCAGCATTGGAGGACTATCACCCTGCGGAGCTGTACCGCGCGCTCGCCGTGTCCGGGGGCACCCTGCCCCGCCGAAAG
Seq A exon
GGCTCAGGATTCCGTTGGAAGAATTTTACTCAGAGTCCTGAACAACAACG
Seq C2 exon
GAAGGTTCTGACTTTGGAGAAGGGAGACAACCAGACCTTTGGCTTCGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007346-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.716 A=0.706 C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0059519=PDZ=PU(18.4=84.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACGCAGCATTGGAGGAC
R:
TCGAAGCCAAAGGTCTGGTTG
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]