BtaEX6020592 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021658 | GRASP
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:HGNC Symbol;Acc:HGNC:18707]
Coordinates
chr5:28023716-28027764:-
Coord C1 exon
chr5:28027442-28027764
Coord A exon
chr5:28025361-28025410
Coord C2 exon
chr5:28023716-28023770
Length
50 bp
Sequences
Splice sites
3' ss Seq
TGACTCTCCTTCCCACCCAGGGC
3' ss Score
9.3
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GGCTGGCATCCTAGAGCCACCGCCAGCCCCGCCGCGCGGAGAAAGCGCCACCAGAGAGGGGCGCCGGAGCCATGACCCTTCGCCGACTCAGGAAGCTGCAGCAGAAAGAGGAGGCGGCGGCCGCCCCAGACCCCTCCGCTCGGGCTCCTGACTCGGAAGCCGCTCCCGCCGCTCCGACCCCGACCCCGGCCTCGGGCCCCCCTGCTGCAGCCGCCGGCCCTGGGACCCCCGGGGACGAGCTGTACGCAGCGCTGGAGGACTACCACCCCGCCGAGCTGTATCGCGCGCTCGCGGTGTCCGGGGGCACCCTGCCCCGCCGAAAG
Seq A exon
GGCTCAGGATTCCGCTGGAAGAACCTCAGCCAGAGTCCTGAACAGCAGCG
Seq C2 exon
GAAAGTGCTGACTTTGGAGAAGGAGGAGAACCAGACCTTTGGCTTTGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021658-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.824 C2=0.526
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0059519=PDZ=PU(18.4=84.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACGAGCTGTACGCAG
R:
AGCCAAAGGTCTGGTTCTCCT
Band lengths:
137-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]