MmuEX6056608 @ mm10
Exon Skipping
Gene
ENSMUSG00000000531 | Grasp
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:MGI Symbol;Acc:MGI:1860303]
Coordinates
chr15:101224207-101228886:+
Coord C1 exon
chr15:101224207-101224544
Coord A exon
chr15:101226914-101226963
Coord C2 exon
chr15:101228832-101228886
Length
50 bp
Sequences
Splice sites
3' ss Seq
CTGACTGTTTTACCACCCAGGGC
3' ss Score
7.8
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CTACACGCGGCCCGCTGGGCTGGCGTCCCAAAGCCGTCCCTAACACCATCAAGCAGAGAGAGCGCGGCCTCTGAGGGGCGCCGGACGCCGGAGCCATGACCCTCCGCCGACTCAGGAAGCTGCAGCAGAAGGAGGAGGCGACTGCCGCGCCGGACCCCGCTGGCCGGGCTCCCGACTCCGAAGCCGCTCGCGCCGCCCCGCTACCCTCCGGCCCTCCGGCTGCCGCCGCTCCGCCCGGAGCCCCCGGGGAGGAGCTGTACGCAGCACTGGAGGACTATCACCCTGCCGAGCTGTACCGCGCGCTCGCCGTGTCCGGGGGTACCCTGCCTCGCCGAAAG
Seq A exon
GGCTCAGGATTCCGTTGGAAGAATTTCACTCAGAGTCCTGAACAGCAACG
Seq C2 exon
GAAGGTTCTAACTTTGGAGAAAGGGGACAACCAGACCTTTGGCTTCGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000531-'0-2,'0-0,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=0.824 C2=0.526
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0059519=PDZ=PU(18.4=84.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGCAGCACTGGAGGACTA
R:
TCTCGAAGCCAAAGGTCTGGT
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types