GgaINT0046065 @ galGal3
Intron Retention
Gene
ENSGALG00000012545 | CYTIP
Description
NA
Coordinates
chr7:37858441-37858868:-
Coord C1 exon
chr7:37858819-37858868
Coord A exon
chr7:37858496-37858818
Coord C2 exon
chr7:37858441-37858495
Length
323 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
TTCTGAGTGTTTTTTTGCAGACA
3' ss Score
7.77
Exon sequences
Seq C1 exon
CTCGCTCTGACCAGATCCAGCTCCCTGGGGGACTGCTCCCGGCCACAGAG
Seq A exon
GTACGGCGATGCCGCGCCAGCTGTGCTCACACAGTGCAGCCCCGGGTGGGATGGATCACTCACGGGGGAAGCAGGGTGGAGGGGCTCAGGCACGGAGTCATAGAAATATAAGATATCCCACTTGGAGGGGACCCACAAGGAGCAGCGAGCCCCACACAGCCCCCCTTGAGCCCAAAGTCTGAGGTTGGTGTCCCAGTGCTCCCTGAGCTCCGGCAGCTCGGGGCTGTGCCCGCTGCCCTGGGAGCCGTGCTGTGCCCACTGCCCTCTGCGGCACAGCCTGTCCCTGCTGTACAACACGCGTAATTCTGAGTGTTTTTTTGCAG
Seq C2 exon
ACACTTCATTTCTATATTCAAAGAAGATAAAGAGACATTTGGGTTTGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012545:ENSGALT00000020489:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0059519=PDZ=PU(17.4=78.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]