RnoEX0026077 @ rn6
Exon Skipping
Gene
ENSRNOG00000004772 | Cytip
Description
cytohesin 1 interacting protein [Source:RGD Symbol;Acc:1307990]
Coordinates
chr3:44169228-44224182:-
Coord C1 exon
chr3:44224082-44224182
Coord A exon
chr3:44169587-44169636
Coord C2 exon
chr3:44169228-44169282
Length
50 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTTTATATTTTTCAGCTT
3' ss Score
9.18
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GGGGCTTCGAACTCCCATGAGTGGAGCATACAAGACCTCATTTGCTCTGGCTTGGAGAGCAGGAGATGTTCTCACTGACGTTTGCCGGCCGAAGCCCTATG
Seq A exon
CTTGCGTTGGCCAGATCAAGCTCTCTAGGTGACTTCTCCTGCTCTCAAAG
Seq C2 exon
GAAGGTTGTTACTGTGGAAAAGCAGGACAATGGAACCTTTGGATTTGAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004772-'0-3,'0-2,6-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0059519=PDZ=PU(18.4=84.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTTCGAACTCCCATGAG
R:
TCCAAAGGTTCCATTGTCCTGC
Band lengths:
143-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]