GgaINT0046064 @ galGal3
Intron Retention
Gene
ENSGALG00000012545 | CYTIP
Description
NA
Coordinates
chr7:37858819-37861248:-
Coord C1 exon
chr7:37860961-37861248
Coord A exon
chr7:37858869-37860960
Coord C2 exon
chr7:37858819-37858868
Length
2092 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TCTCCCCTTTCTGCTTGCAGCTC
3' ss Score
11.9
Exon sequences
Seq C1 exon
GCCCTGGTGAGCTGCGAGAAGAGATTTATGTAACGTGCACCTAAACCACAAGTCACATGGCCCGCTTTCCGTTTTCATACTTTCTGATTGCTCAGGGAGGAGAGTGCACCCGAACCGCGCCGTGCTTTGCGATGCCGCGCTGAGCGCCCTTCCAGCAGGATGTCTGTGCGGCGGCTCGCCCAGCACGGCCAGCGCTCCGGCACTGGGGATCGGGGTGTGCAGATGGACGGCAGGCGGCTGCAGCAGCTGGTCAGCACGGTGGGGACGCTGCCGAGGAGCCGCAAGCAG
Seq A exon
GTAGGGCACCTCCAGCCTGCAGGGCGCCGAGGGCAGGGTGTGAGTTCGGGTCGCGGTGGGCTCTTTCCAGCAGCTGTTGTGTGGGAGTGCTGCCAAGGGGAGCTGAGGGAGGAGACCGTCCGGGGGTGCTGGGGGTCAGCAGAGCTCCTGCAGCGGGGATACTGCCCGGGCTGCGCTTCTTCGTCCCAGGTGTGCTGTGAGGCACGGAGGATCATCCCGCTGCCTGGCGTTCCCTTAAACTTGGGTGTGCTTCAGCACGGTGGCCTGGTTGTTCTGCATCCTTGGCAGGAAGCACCTATCGGGGGTTGTTTCCTCCCAAATGTTGGGGTATTTTACTACAACTGTTGTAGCTACTTTGGCTATCCCTGTCGCTGTGCTTTTCATAGAATCAATCACAGAACCACAGCACGGCTGGGCTGGAAGGGACCCCTCGGCCTCAGCCCCAGCCCTGCCATGTGCTGGCTGCCCCCCAGCTCAGACTGCCCAGGGCCCATCCACAGCCTGGGGCGCCTTCAGGGATGGGGCACCACAGCTCTGGGCAGCGCCACGGCCTCACCGCCCTCTGAGTAAGGAATTTCTTCCTCATGTCTGACCTAAATCTCTTCTTCTAGTTCAAAAACACTCCCCTTGTCCTGTCACTATCTGCCCAGGTACACAGTCAGTCTCCCTCCTGTTTATAAGCTCCCTTCTCCTGCAGAACAGCAATTGTCTGTTGTTTGCAACAGGAGGCCGACAAAACTGCCTTTTGCTGCCGCTGTAAATTGCCAGCTGAGCAATTGTAGCTCACCTGTTTGTCTTGTGTGAATAAGCCTAAATTGAAAGTGCTTGAAATGCATTATAATCTTGAAGCGTTATCGGAAAACTGGCACGTAATGTCTATGCACTGAAGGCTCTGCTTTGTGCAGCAGCAAAAGCACATTCCTCCCATGCAGTCCTGGGGATGTAAAGGACAGCCAGAAGCAGAGGAGCGCTGGGCACGCTGCCGCTGCATTGGTGCAGCCACCACCAGCAGTGATAGAGCAGCACTTGGTGGTCCTGGTGCAGATAAATGAGCAATAATGTCCGTGATGCTTCTGTGTGCGTTAATGAAGAACTCCAAGTGCGTTACTGCATGGCACCCCTTGCTCCTCCCTGCTTCTCTCTCCAGTTAAACACAGGTTCATAAAATGGAAGTTGTGTTGGTGGTTGCACGTTGGCATGGCTTTGCACTATTGAAGCCTCGGTTGTTTTACTATATTGACTATACAGTTTAGTGATAATGTAATTCCTTATTTTTGGCTCACGTTTATGGAAAGCATTGATGTTTAAGTGCTGATCCTGGCTTTTCTCAGGCCTCTGTAGGCACAAGCCTGCCTTGCCCGAAGCAGGGATGCTGGTTGCCATGGCCATGCATCAGCTTGGAAACGCTATTTGGCCGCCACCAGTAGCTACTGAGAGCTGCCTGCAGCTTTGTGGTTTGTGTACATGTGTGTCTGCTATCTGCCTTTTTTGATAGGTGTTAACGTTATAAATACCTACAGATTTTTTAGGGGAAAGGTGTGAAAGAAAGTTGAGGTCTCAGCATAACAGAAGTGTGATTTGGGCACCTTATAGGGGATAGTTACAGTGTTAGTGGAAATGTTGACTGGAAATCCCTGGCGAATACAGCCTTGGAGCCTCCCTGCTTTAGTGCTGAATGCTGAAGTGCAGCGGGAGGTCCTCCTTTGATGCCCTACAGAACGCTCGCTGCAGGAAGGCTGGGACAGCAGAAAGCTGATGGGCGGTGGTGCTTTCACATCAGGACGGGACTGGCAGTGCGGTGCTGTTCCCCAGGGAGAAACATCCCTTGATGTTTTCTGGATGTGAACAACTGGATCAGTATTACCATGTGCTGAGAGCACCCACAATTTTGTTTTGCTCTGTGGTGTTCCTATCTTGGCAGTGCTGAATGTCGTGTTTGAAAGATTTGGAAAAATGCTATTTTTGAGGGGCCGATTTCCAGCCTAACAGCAGCACAGCAGCATTCCTCCAGCAGCAGCTTCCTGCAGGCCGCAGGGAGCCCCGAGGAGCTGTGACCCCACTGACCCTTTTCCTCTCCCCTTTCTGCTTGCAG
Seq C2 exon
CTCGCTCTGACCAGATCCAGCTCCCTGGGGGACTGCTCCCGGCCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012545:ENSGALT00000020489:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]