MmuINT0045566 @ mm9
Intron Retention
Gene
ENSMUSG00000026832 | Cytip
Description
cytohesin 1 interacting protein [Source:MGI Symbol;Acc:MGI:2183535]
Coordinates
chr2:58004125-58012533:-
Coord C1 exon
chr2:58012293-58012533
Coord A exon
chr2:58004175-58012292
Coord C2 exon
chr2:58004125-58004174
Length
8118 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTGCTTTTTATATTTTTCAGCTT
3' ss Score
9.31
Exon sequences
Seq C1 exon
GCATTTCGCTTCCTCCCTCCTGCAAGGCCAGGGAACCATGTGTTGGCGGGATTAATCTTTGCCCACAATGTCTCTGCAAAGGTTTCTGCAGCGGCAGGGCAGCAATGGCAATTTGGAGTACTGTGCTGACTCTGCCTACGGCTCCTACTCCGTCCTCACGGGCCAGCTCACGATGGAAGACAACCGAAGGATTCAAGTGCTGGCAGACACTGTAGCTACTTTGCCCCGGGGACGAAAGCAG
Seq A exon
GTAAGGTTGCTGCGCTGTCTAGAGTGTTCACGTTTGCCTGACCTCTGCTGAAAGTGGTACCTGCTCCTGCGTGTCTCTGTTAACTTTGACTACCAGCCTTATTCCCCGCGCTTAGGAGTCATTTCGGTTCTTATTCAAAGGAGAGTTCTTTTCCCTGAGGAGAACCTCTGTCTACTACCCAATTAACTTAGGAGTTAATGACTGAGAGTACATGTGAGGGGGGAGGTGACATGTCTACCAGAGATAGTATCACAGTTGAAGGATAGAAAAACAGTCACTTTTTTTTTTTTTTAAAGTAAGACTCAAATATTTATCTTCATTTAAAGATGTGCTCAGGTAAAATGAAAGTTGTTGAGAACAATGAACATGAAGGTCGTTTACAGGTACACAACCCACACGATCAACACTCCTCCGTTTGTGTGTCTGTTCATTGTCTCCCTCTGGGCTTACCTCCAGGCCCCGTCAGTTCACAATCGAGAGAAGACTTCTCCTTGAACACTACCTCTGTCAGCCAAGTGAATTCTTCAGTCCTGGAGCAATGATAGAACCTTGGGCTATTGGGAAGTAGGACTATTTCGGGGAGGTGAATGGGCTGCTTGGTAGCTGTGGCATACAGAGCAAGTTGGTAGCTGCCCCCCTCACATTATGTCTTTCTGAAAAGGAAGCTATCAAACTAAACTCCATTCACTTGATTAGGTAACAGCAGAAACAACTTCCTTGAACCCTCTGCCCTTTAAGTAAGGAAATGTACAGGGCACTCAGCACTCAATAAAGGCTGTTCGAAAATTTTTATGAAATGTCTTTAGAGATGAAAACTCAACTGGAAAAGTATGTGTCTAGTGAATTTGTTCTGAATCTTTGGTCTTCCATTTGTAATACATAAGAATGAACTATATACCACTTTATGTATTTTGATCATATACTTTTCTATAAGGTCCAAGGTGTGTATTTGAATTTATATAAACAGTCATGCACAAGATGTTTAGAACTGACTTAAAACACAGCTTTGTGGCTTACTACATTGTGCATATTGTGTTCTCCTCTGAGCTCATCTAACTTCAGCATTACAAAGTTGAAGCGTAGGGGAGAGTCAGGACCTGATGTGGTGAGTGGATTCCTTGGCATTTTCCACAGTGATGAAGCTCATTTGCTAGTAGTTGATTGTCATTCTCAATCCAACGTGTTTTTATAATACAAAGTTTGGTGAACATCTGTATCGATTTATAAATGGGCAACACAGGAAACGCCAACGGGTTTACTCAGATTCTAAACAGAGAGCAGTCTGTTTCTCTTTCTATTTAATACAAAGCCATTACACCAAATTCTGATCATTTGCTATCCTACTATTTGTTCTCGGCATATATCACTTACCAGGAAAAATACTGTTAATAACTGCACCACGGAGGGAATCTTTCCAGATCTTGTTCTCAGCTCAGGCTTTACACGTTGCCAGTCCCTGCCAGGTAAATCAAACTATATGTCAGCCCTGAGGGCTGGAGAAGGGTTAGCATTAGGGGACAGTTTGAGCAGGTGTATATGTAATATGTCTCCATAAACTGTCTTAGGCTTCCTAAGCATGGGAATCCCTAATGTGGGGACACAGACTCTGGTGTGTCAGGAAAATCCAGTGTGTGCCTGTGAGAGTTGAGAGGAGGGACAGCATGTGGCCAGTTTCCTTGAGAAAATAGTGCAGTTGGTTCTTGCTATCCACAGAGCATTGGTTCCAAAACTACCATCTTTGAAAATCAAAGACCAGAGATGTTGGACTCCCTGATATAAAATGGCAGCATATTTGCCTATAAACTACTAAGACCATGTCTAATACCTAAGACAATATCACTTGCTATGTGAGTAGCTGTCACATTATAGCATTTAGAGACTGAGGGTCGAAAAGAAACATACACATGTTCAGTACAGAACATGCCATGTGTTTCATTTCTATGGAGTATTTTCATCATCAGATGGTTGAATAGACAGATTCAGAACTATGATTTGACCAGCACCTATAGCCATTGAATAATTGGTTTGAGATATTGTGGATTTTAGGAAGTTCGTTCTAGAAATGAGACAAGTAGGTGGAGGAACTTTTACTGTAGTTGGTGAAGGAGTAGACGAGGCAATGGAGAGAAACGGTAAAGACTTGGTGATCAACAGCAGTAAGAACCAAGGAGATACAGCTGGCTTTTAAGCCTGAGTTTAGATAGTACAAAGTGGAAAAGGACAGTAAGAAGGACTGGATGGGTATTAAAGGGGACCGTAGAGGGATTTATGAATATAAAATGTGTGAGCACACAGACTTGCTATGCCATCCACTTATGTACGGGCCCTGTTGTATTTCTTCCCTTTCTCTTCTCATACATTTAAACACACTGTGTGATGTACTTCCCCTATCCTTGAAACCTTTTCTTACTTTTCTATTTCCCAAAGGGGAAAAAAACAAAACAAAAACAAAAAGAAACCAAACATTTTGGGCATAGACTCCTATAATCCCTTTCAGTGAATCTTCACAAAGGTATATGTCAAGATTTTATAATTTCCCACAGGGATTATTGCCTCCTATTAATTATTTCTTAGAAAAACAAACAGACAAGCAAACAACAATAACAAAAACAGCAGCCCACCCCTCTGGCCCTGTGTGAATGGTCTGTACCAGGATCTCAGTGAGGCAATTGCGGTAACAGGTGTTCCTCTGTCTGCTGTTATTCTCACTACTCTGAGGGTGACGTCAGTGTTCATACTTCTTGTTGTTGTGGCTTTGGCTTCTGCAAAGCTATAACTGGCTAGCTTGTAGCTTCAGCTTAATTTTCAGGATCCACTGGTTGTTTGCACTCAGAGTTGTTTAAAAATAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTATTATTTCAGTACCTGCATTTGTAGAAGTGCCAGACACACCAAGAATGCTTCTAATTTTGAAACTTGGTTTTTTTTTTTAAAGTGGGGGGGGGGGCAAAGTCCCTGCAATATAAACTCTTGAGGGAGGGTGTTGCGAGGAAAGGGAAGTTTTATAACCATGCCATGCCCTAGGGGTAGGTATTGTGCCTGACTGCCTCTCCCAGGAGACTGTACTGAAGGTGGCTCTTACCTAGTGCTCCAGGGACAGCAGGGAATCTGGCACACAGGTATGACGTTTGAGTATGAATTAGACCCAAACAGATCATCATTGTCTAATTTTCTCTTGGTGAGGAAATTAGCGCTAATGAGGAAGCTTCTGGATGGCTGGTTTCACATACAGTTTTGGTTAGGGATGGTGCTAAATGCTTGTAATGGGTATAGCTCTGGGTAGGTTCTGCCTACAGGGAGGACTTTCTTTGTCCTAGTACCTCATCAATAGGCAACATCAATACTGTGGTGTTATGTCTGGGTTAATACCCAACCATTCTTTAAGATGTATTTATTTGAGTTCATGAGTACACTGTTGCTGTCTTCAGAGACAGCAGGAGAGGGTACCACATCCCATTTCAGGTGGTTGGGAGCCACCATGTCATTGTTAGGAATGGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCTTCAACCATTCTTTAAAAGAGGTGCGGGGCTGTGATCAGACCTTCCTGTAAGCTGGGACAACCCATTTACGGGAGTATGGGTCAGATAAGTGTGACGTCGACTTTACTTTCGTTATTTTGTTGTGTCTTTGGATAGTTTGATAATCCTTTCTGTCTTAATGGTCTGACTTTCAAAAGTAGGGGAGAGCTGTATTCATGAAACAGCTGGGAGTAAAAGTGAGATAAGCAGGCAACTGGGAAGAGTCAAGGACATAACTTGAAACAAAGTACTTAAAAAAAAAAAAAGAAAAGAAAAAAAAAAAGGAAGAGAAAAAAAGGCCCACTTCCGAATCTGTACCCTCTCCTTACCACACCTACATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGGGGGGTGGTGGGGGGGTGGCGGGAAGTGAGTTCACAGAACCCGGGCGAGAACATAACAGTCTAACCTAGCAACAAAAATGACTTCAGTGTTGGTCTCTGAGCTGCTCTGTGGCAGGTTATCCATCAAGCTGTGTTTCCGATTTCCTTCTATTTTGCACACTGACAGCTGCTGTATTTGGTCTTGATTTTGCACTAAAGAGAGACCCGTGAATCACACTGCATAGCAGGAGACATGGTGTGTGGAATATTAATGCTTTGTCTCTTAAGTTGTCTCACTGAAAGCAGAGGAACTTCTCTAAGATCAGCCCCAGACACCAGGCTCCTGGCTAGTGAGTAGATAAGGAGCCTCCTGTACTGTAGTCAGAGCCCAATGTGTAGCTTTCAAGCCTGCCAAATTGCTAAACCTAGACTTCTCATATTAGATAATGTGTAATAAAAGACAGCTGTTGTCAGCATATGCTGTAAATTGCACACCAGTTCTCCATTCATGAATTTGGGGGCGGGGTTTGGGGCATCATTACAACTCAGAAGAACTCTGGCTGGGAGGGCAGTCTGGGGCACACCTACTCCATCCAAGTCTACATCTTTAAATAGGGCTGGTGCATGCTAGGGAGAGGGAGATGGGGAAAGCTTGATTCAGAAGTCTTGGGCACACTCCGAGTAAGACAGGCAGTTTAGCAGGCGAGCAAGGCAGAAGCTTGAGAGTTTCTTTTAGCTCATCCCAGATAAAAATTAAGAGGACACTGTGTCAAGATGTGCCCGATCCCTGCCTGGGAGTGGTGGCACATGCCTTTAATTCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCCAGGCCAGCCTGGTCTAGAGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAGTCCTGTCTCAAAAACAAACAAACAAGCAAACAAATGAGCAAGATGTAACTGTTCCCTCCCACCCCCATCAGAGAGTATGATGGTAGCTATTGTATTTAAATTGCTTTTTTATTTATATGTTCATTGCTTAAAATAGCCTATTTGCTAATCCATAATGGAAGGTAATTTATAATCTGATTTAGTTTGAACTTTTGTGTCACTGATAACCCAAACAAATGAGTAGCAGGAGTGCTCCACCGTTGCCTTAATATTCACTTTTAGTCAGAGAGCTACACAGAACTGTTAAAAAGGGGGAAGCTAGGGGCACCCTCTTCTGTATAGAGAAACCTGTTTGGTGGACCTAGAAGATTATAGACTTAAATCTATGCAAAATAACCAGTCACTTAAGAGGCACAGTGAAGAACTCTTGAGACTTCCAACAATTCTATAAATACTGGGCAAGGAAAAGGACTTTTAACATTATGGTAGCCAGACATTTTATTAATTCTTGCCACCTGTTTGATTTGTGAGGACTAATTACATCTCTCCAAAATTCATTCATTTAGCATTAGTTTTATTTGTTTTCCTTAGCTCTCTTTTTATACTACTTGATTTTTGAGTAGTTTCTTACCATCCTGTTGGTTTCTTTTGGTCTTTTCTATACTATATTTTAGATTTTATTTTTTTTCTTTTAAAAAATCACCCTTGGAGCTGGGCATGATGGCGAACGCCTATAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAACCCTATCTCAAAAAACCAAAAAAAAAAAAATTACCCTTGGATTTTTTCCCCTAAGAACATTTAGTTTAACGAAGGACAAAGTTAGAGAGGGATCTTAGCACATCACATTGAACTGAATGCCTCACCGACAGTCACTTGCAGATGGCATCTGAGGCTTAGTCTGTCTGTCTGTTTTACTATTTTTAAAGTCATAATCTACCCTTGGCCTCTCGTGAAGCACTGGGGTGGAAAGTAAAAGCTGTGTATTTCCCCAGAGTCTCAAAGCATACAGATGGCTATCTGCAGAAGTGAAGCACTCCATCAAATACACTCTATGCCCTTCATATACATGCCCTCGTGTAGACACATACACGCCTCTAGATGAATGATAAGGGAATGATGTACAAACCACAATAGCAAGAGCAACGTTTTAAAAACATAAAGTCCTTAGCGGTGGTTATAATGAACAGAATTAAAGACAGCTGAAACAAGTACCTGAAAATATGTGAATTAGCTGTGAAATACAAGGAAATGCCAATAATGAAAACAGATTAAGAAAATCTGAGCACACAATAGGGTGAGATGGACAATGCTTGCAAATACACCTTTTAAAAAGACCTTTCACAAGGATGGAGCCTTCAGATGGAGCCTTCTGACTTAACTGAAAGTTCCCACTCTTGTTAATCTCTCCCCCCGCCACCCTGTGTGTGTGTGTGTGTGGGGGGGTACATTCGTACATTCAGTAATTTAGGCACAAAACCAGATTATTGTAAACCATTCCAATTGCTGTAGGTATCCCATAATTAGTCCTTATAAATCAAAAGCCGAAACTTATTACGAGCCGAGATGATAATTTTAGGTCTGAGCCCTTCTGCTTGAGATTCCAGGTATAACTGACAAAAGAACACAGAGCAATTGTTACGTATAAAATCTGTGGATGACTACACTTCTCCGATATGTATAGTGACTGGTGGCTGAATTCTTAACACTGAGGCATCCCAGAAAATTGTGCAATTGTTGGCATTTGGTGGCTGGCAATTGAGTAACACAGATTTCTGTGGAACTTGTCCTGTATGCATTAATTTCTCCTGTGTATTTTCCATGTGTGCTTTTATCCCCACATCATTTTTATTTATCTGTACCAACTGCCCGGATCCACTATTTTATTTATTTGCTTATGAATGACAATTGCAGGAAGTTGGCATTTAGACACCATGGCTTATTGGCAGAAAAGATGGCCCCTCATTAAGATCACTTGTGCTCTTGTAGAAGAGCTATATTCAATTTCCCATGCGTTTATGGAAGCTTACAACAGGTAGCCCTTAATTTGGTAACCTCTTCTGACCTTGCAGACATCAGTCACCACATAACATATGTGTGTGTGTGTAACAAAACCTTTTAAAATATAATTAGGAGCAAAAGTTATGTCTTGAGTCCTTGGAACAGTGTTTAAGAAAGGACTAATTAATAGCTAACATCTATTAAATATTTCTTTAACAAACCTACAACATTGTTAGAAATTGACCGCAGTCCTTACAACTAAGGTCTTCCCTTTTGCTGACCCCCTCTCTTTATAAGAGTCTGGCTTGACCCTGGAAGCTTATGCTTATATGACTTTTCCCAAAATGTGCAGAAGAGTGAACGTTATGTTATTTATAGCATTATGAAGTTTCTTCCCTTTCTTGGCAGGAAATCTTACTATATTCTTCCAAAACTATTGTGAAATAAGTCATAATCGAAATTGAGGTTTGGAGTCCCTCCCTTGCCTTTCCTAATCTATTTTTTATTTTCTAACCTATTTGTGCTTGGGTGGTGGTGTTGGGAACTGAGTGAGTGTCACTGTGTGTGTACGTGCATGCAATGCTGTGCGTGAGGAAGTCAGAGGACAAACTGCAGTCGGTTCTCCCCTCTCACCAATCAAACCTGGGTAGTATCTTTACCCACTGAGCCATCTTGCCAGCCATCTTCAATAATATTTTTATATGTAAGCTCGTTCTTTACATATTTTCTTAGCCTACAAAGAGTAACACACTGAACCGTTATAAACATAAGCATTTCATCAGTGTTTTAAAGAGTATGGGCTGCATGGTTTTCATATTATTCTATGTAGGTGTTTCAGTGTGGTTATAAATTGCTAATTTTGAGAAGTAGACATAAATGCAACTTAGGTGTAAAGTCCTTGCTGGACGTTTGAGGTCTGCGACATGATATGAACCCCCACCACCCTAGTATCTTACTATTTGATCTTTTCCTCATCTTCTCAACAGAATGTCTGGAGTCCCTGTTCTCTCAGACTCTCCTTTGCTGTTAAAAGAGAGTGGACATTACTAATCTTATCTAAAAGGGTTTCCAGGATAATGAGAAAGAACGTCCTTTGTAATGCAGAGCAGTTGCACACATGTCTTAAAGACCTTGCTTTTTATATTTTTCAG
Seq C2 exon
CTTGCGTTGGCCAGATCAAGCTCTTTGGGTGATTTTTCCTGGTCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026832-Cytip:NM_139200:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: