GgaALTD1007945-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4857198-4857799:-
Coord C1 exon
chr15:4857654-4857799
Coord A exon
chr15:4857632-4857653
Coord C2 exon
chr15:4857198-4857378
Length
22 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TCTTCTGTTACTGATGACAGGTT
3' ss Score
5.46
Exon sequences
Seq C1 exon
GCCTTGGCTGGGGAAGTTGGAATGAGCAGTGAGCTGGACGATGTGGCTCGGGCGCTCTTTAACGGACAGATTCCTGGCATCTGGAGGCGGCTGGCCCCCGACACGCTAAAAACACTCGGAAATTGGATTATTTTCTTCAGAGATAG
Seq A exon
GTATAACCAGTACAACACCTGG
Seq C2 exon
GTTAATGAGTGTGAACCAAAGGTGATGTGGCTCTCAGGCCTGCACGTTCCAGAATCTTACCTGACAGCTCTTGTTCAAGCCACCTGCAGGAAAAACAGGTGGCCCCTGGATCATTCCACTCTCTACACCGAAGTGACCAAATACAGGACTGCAGAAGACATCACTGAAGGGCCTACGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-90-100,91-100-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGACACGCTAAAAACACT
R:
AAGATTCTGGAACGTGCAGGC
Band lengths:
109-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]