GgaINT1011478 @ galGal4
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4857198-4857799:-
Coord C1 exon
chr15:4857632-4857799
Coord A exon
chr15:4857379-4857631
Coord C2 exon
chr15:4857198-4857378
Length
253 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TCTTCTGTTACTGATGACAGGTT
3' ss Score
5.46
Exon sequences
Seq C1 exon
GCCTTGGCTGGGGAAGTTGGAATGAGCAGTGAGCTGGACGATGTGGCTCGGGCGCTCTTTAACGGACAGATTCCTGGCATCTGGAGGCGGCTGGCCCCCGACACGCTAAAAACACTCGGAAATTGGATTATTTTCTTCAGAGATAGGTATAACCAGTACAACACCTGG
Seq A exon
GTGAGTAAGGGACGGACTCCAGAAAGCTCTTTTTTTGTCTGTTTTGTACGCAGTGCAAATTGGTGATGGGGTACAGAAGTCATTGTAATTTCACTGCTTTAAATAACTTAATTTGAACTTATGCCAATCGATCACCAGCTAGAATTAGAATGAAGCCACTGGCTAGTCTTTAAGATTGGCCTCTGAGCTGAGGAGGAGGTTTGGTGGGAGCGCAGACCAAGCACTGCAGGCTGTCTTCTGTTACTGATGACAG
Seq C2 exon
GTTAATGAGTGTGAACCAAAGGTGATGTGGCTCTCAGGCCTGCACGTTCCAGAATCTTACCTGACAGCTCTTGTTCAAGCCACCTGCAGGAAAAACAGGTGGCCCCTGGATCATTCCACTCTCTACACCGAAGTGACCAAATACAGGACTGCAGAAGACATCACTGAAGGGCCTACGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:75
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCTCTTTAACGGACAGAT
R:
CGTAGGCCCTTCAGTGATGTC
Band lengths:
295-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]