DreINT0009159 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27774854-27777081:+
Coord C1 exon
chr5:27774854-27775021
Coord A exon
chr5:27775022-27776900
Coord C2 exon
chr5:27776901-27777081
Length
1879 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
GCCTTTTTTCATTGGTGCAGGTG
3' ss Score
10.03
Exon sequences
Seq C1 exon
GCTCTGGCTGGTGAAGTGGGAATGAGCAGCGAGTTGGATGAGGTGGCCAGAGCTCTTTTTAATGGGCAGATTCCTGTGATCTGGAGGAAACTGGCACCAGACACTCTGAAATCTCTGGGAAACTGGATGATCCACTTCAAGAGACGACATGAACAGTACAGCTCATGG
Seq A exon
GTGAGAATCCGATAACAAACCATAAGTGGGCATTATTTTCTTGGCAGGCTCCCTCTTAGCAAGATTTTGTTGCTTATTATTTAGTTAAAAAGTACATTGGATGTTGTGCAGAACTGGAGGAAGAGATAGATGGGAGTGAGCAGTCTAGAGAAGTGAGAGAACAATTCAGTGTCTGCTTTTTGAGTTGTCATGAGATTATTTGCATGTACTGATATGCTACAGTTTATATCAGGGGTGCCCAAACTTTTTCTTATGGAGGAAGGGCCAAAATCCAAACTCTAAAATATGTTTTGAAACTGATATTTTTATCCAAGGTTATCAAACTGTTAGATGCTTATACCGGCCCATACACAGAGCAGCCAAACACAGCAGTGTTTGTTCTTTTTACCCTAAAAAAAAGACTGTTATCAGACCTAAGTGGTGTTTCTAGTGTTTCAACTCAGTTTTAGCCACAACGTTTGAGCATGTAAGGCCGGTAAGTGATAAGTAATGTCACAAACTTTTGAGTTATAGTGTCAGGATTCTGCCACTCCGATCTTGTTAATTCATGTTTTGGTAGTCCAGACACTAGTCCTGTCATGTCTTGTATGTTGTGCTCGGCTCGAGTTTTCTTCAATCATTTTCTGTCATTGTGTGTCTTTTGTATGAGCGGTGTCTCAACCGAGTTTGGGTCATGTGCGCTCCAGCTTGATGCAGGGCGTGAGGTCTGGGTGTGTTTGTGACACACGCTCTCGTCCTGGTGTTTGTGTTTGTTCTGTCTGCAGCGTGCTGTTTCATTCTTAGCGTCTTAGTCTAGTTGGGTTCGGTTTCGGTTGGCGTTGAGCTGAAATATCCACGTTGCATGTGTGAGTGCACGTTGAGTTTATTTATCGTGTACTCGTGTTGTGCGTTCAGTCTTCAGTTGGTGTGGTGTTTAGCATGTTTTCTGTTGGTGGTTTATGTTTACATGCACTGCTTGCTTTAGTGTCTCATGTGAACACGCGGTTAATGAGTTCTCTTATCAACCGCGTGTTCACATGAGACACTAAAGCACCCTCCCTGTTAACCCATTGTTAGTTTTTCCTGTTCACTTGTCTGTTGATTATTTCTGCTTATATTCTCATGTCTGCTGTCCTGTGCCAGCTTGTCGTCATATGTTGTGTCCAGCCCTGCTCTTCCCAGCCCAGTTTGGGTTTTAGTTATGTCTTTGTTTTTGTTGCATTTTTGTTTTATTTTTATTATTAATAAACCAATATTATATACTGCATTAGAGTCCTCGCTCCCTTTTCCTGAGACCATGACAAGTAGTGTGTCTCTGTGCACTTGATTGAAGAATACTTATCACCCTTTGTTTTTACAGGGTGTCCGCAGGGTCTTAAAAAGTATTAAATGTTGATAAATTATTTTAGAGAAATTTAAGAATCTTAAAAAGTCTTAAATGCTGTTACAAGGTATTAAATTTTGCATCATTTTTGATTATACAGTTATATAACGTTATTATAGTTGTTAACTAAAGTTAGAAATTTTGGGATGCTATGTAGTTTATGAAATTGATAGAATCCTGCCATACTTGATGTCGCACTGCTCTGTTTACTACAGTAACGAAGGCAGCACCATTATTTTTGCTGTTCTATAGGCGACACCTTATGGATTAACATTTTTATAAAGTATATGAGTATTGTTTCAGTTTAGGATTAGTTTCTTACAATCCATATTTAGGGAATATATTTAAAATGTCACTAATGTTACTGGTTCAGTAGTGATAATGTCTTAAAATGTATGAAAAGAGTGTAAAAAATGTCTTAAAAGGTTTTAAATTTTACTCTCTGATTCCTGTATATACCCTGTTTTAAATGTAATGAATGGCCTACTAAATAAATGCCTTTTTTCATTGGTGCAG
Seq C2 exon
GTGAATGAAGGAGAGCCGTACGTGATGTGGCTCTCAGGTTTGCATATCCCTGAATCGTACCTGACTGCGTTGGTCCAGGCCACGTGCAGGAAGAACGGCTGGCCTCTGGATCACTCTACTCTCTACACACAGGTCACACAATACAGCAGCGAGGACCAGGTCAAAGAGAGACCAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGTGAAGTGGGAATGAG
R:
CTTGTCCTGGTCTCTCTTTGAC
Band lengths:
344-2223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]