MmuINT0050642 @ mm10
Intron Retention
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124830633-124832630:+
Coord C1 exon
chr5:124830633-124830800
Coord A exon
chr5:124830801-124832449
Coord C2 exon
chr5:124832450-124832630
Length
1649 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CACCTTGCCTACTTTTGCAGGTT
3' ss Score
9.48
Exon sequences
Seq C1 exon
GCCTTGGCTGGGGAAGTCGGAATGAGCAATGAGTTAGATGATGTAGCCAGGTCTCTCTTCCTTGGGCACATCCCTCACATCTGGAGGAAGCTTGCCCCCGACACCCTGAAGACCCTTGGAAACTGGATGGTCTACTTCCTGAGGCGGTTCAGCCAGTACACACTGTGG
Seq A exon
GTGAGTGCGGGGGCCACTGTGGGTTTGTCTCTGGACACCTACCTGCACCTGTTTTCCCAGCGTTGGCCTGTGAATGTGTATTGGGTGTGCTGGGGATAGCCTCGGTGGCCACAGGGCCAGTCTGCGCTGGTATGCCTTTGTGACTCTTGGCTTGCTATGCTCCTATGATGATTTCTTCCAGGTATATCTTGGCATTTGTTCTAGCTTATTCTTTTTTAGGGTCTTTGTTCATCCTCCTATGGGTGGACATTCAGGTAATGACTATGTAACTGTGTGCCACAAAGAGCACCATTGTTACTGTTCATTAATGCAGTCTGCCTAGAACACACGTGCATTTGATTTACTTATTAACTGTGAGATAGCCTCTAACTCTGTAGCCCAGGCTGGCCTTGAACTGGTGACAATCCTCCTGCCTCAGCCTCCCAAGTGTTGTGATTACAGGTGTGAGCTGAAGTCTTGTCTGTGAGTATTCTGGAAAGTTGAAGATTTAATACTCTGGGATCACACTTGTTCTTCAAATCTTTGTGATCTTTGAGTTTGGGGTCTCTGCTTGCTAATGGAACATCTAATTGGTTTTGTCCTGTGTCTCTTTAATGAAGGTGAAGTGGGGGGTGTTTTATATACTTAAAGGCATTTTGAATTTTCTGTGAACCGTCATCATTCATGTCTGTTTTCCTTTTGGTAGAAGACTCCATCTTTTTACATTGATTTTTTAAAAATGTATGTGTGTGTGTGTATGGTTCATATATGGAGGTCAGAGGACAACTTTTGAGAATCAGTCATTGCCTTCTGCCTTACTTGGCCATCGTCCTGTCTGTCTCCCATCTCACTGTAGAGGGCCCTAGGTTTACAGATGGATGCCAGCACACACAACGTTACATAGTTTCTAGGGATCCAGACCCAGGTCCCCAGGTTTGGGTGTGGCTTTATCCACTGAGCCATCTCCCCAGCCCTTCTCACTAGTTTTTAAGAGCTCTCAGTGTATGAGAGAAAGTAATCCTTGGTGATAATACAGACTCTTCCCTTGGATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTTTCAATAGAAGGGTATTACATTCGTGTACAGTTGAATCTTTCCTTTGGTGGCTTCTGGGCTTTGTAATTCTCCACTTGAGAAAACGGTGGGAGGTTTGATCGGTACTTTTATGGGTGTGTGTATATCTGAGTGCATGCAGGTATATGCACATATGTATAGAAGTCATACATGAACCCCGAGTGTCATTCCTCATAAAGCCATGACTCTGCTGAGACTGAGTTTCTCATTAGGACCCGGGGCTCACTGACTTTGCTGGCTGGTCAGGGCACACCAAAGATCTGTCTCTACTGCCTCAGCACTGGGGTTACAAGGATATGCCACCACACCTGATGTTTTCAGTGGGGGTTCTGAGGGACAAATTCAGGTCCCCACATTTGTGTGGCAAATACTTTAATGACCTTGGTATCTTCCTAAATTGTTAGTCCACCTAGAGTTCGGTGGTCAGCTGTTTCCCCAGGGGGAAGCGAACTGACCTAATACCAGCAGTTGTCACTGTGGGAAATCAGTATTTCATCAGCTTTGAACCTGGTGTCACAGCCCAAGCTCCCACACCTTGCCTACTTTTGCAG
Seq C2 exon
GTTACTGAGGGCGAGCCCAGTGTGATGTGGCTCTCTGGGCTGCACATCCCTGAGTCCTACCTCACGGCCCTGGTACAGGCCACATGCCGGAGGAATGGCTGGCCGTTGGACCGGTCCACCTTGTTTACACAAGTGACCAAGTTCCAGGATGCCGATGAAGTAAACGAGCGTGCGGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011:ENSMUST00000141137:75
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCTGGGGAAGTCGGAAT
R:
CCCGCACGCTCGTTTACTTC
Band lengths:
342-1991
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types