GgaALTD1007946-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000020077 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr3:16778270-16779278:-
Coord C1 exon
chr3:16779154-16779278
Coord A exon
chr3:16779145-16779153
Coord C2 exon
chr3:16778270-16778434
Length
9 bp
Sequences
Splice sites
5' ss Seq
ACGGTGACT
5' ss Score
5.33
3' ss Seq
ATAATTTTATCTTTTGACAGAGA
3' ss Score
6.45
Exon sequences
Seq C1 exon
AGCCAACTGATGACGACGTTATAATGCACATTTTGAGGCTTCGTGGCAAACTTGGCTGGCAAACAAAGTTACCATCCTGGGAGTATTTAGCTAGAGAGGCTGATGTGGCCAGGCTTCAGAAGTTG
Seq A exon
GCGCTTACG
Seq C2 exon
AGACCTTTATTGCCAAGAGATAGTGGTGAATATATATATTGTCTTCAAAAACACAAGAACAATCTTAGAGTTCCCTACAACCCATACAATTTACAGGCTGTCTCTGCAAGTACAGCTATGCACAGCAAAGAATATTGGACTGTTACAGCGTCTTTCGTGTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020077-7-6,8-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGCCAGGCTTCAGAAG
R:
TGGGTTGTAGGGAACTCTAAGA
Band lengths:
108-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]