GgaEX1020164 @ galGal4
Exon Skipping
Gene
ENSGALG00000020077 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr3:16778270-16780237:-
Coord C1 exon
chr3:16780109-16780237
Coord A exon
chr3:16779145-16779278
Coord C2 exon
chr3:16778270-16778434
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTCTTGATGTAACAGAGC
3' ss Score
6.57
5' ss Seq
ACGGTGACT
5' ss Score
5.33
Exon sequences
Seq C1 exon
ATAGAAGGACTGAAATACAGAAGTCTGTTTTGGAACCAAGTTGCCTTAAAAAGGTTAGTGAGCAGCCAAAGGTTGAATGTTCTCCGAAGAAGCCTATGGGAGCAAAAGTTTATTCATATGATGAAACAG
Seq A exon
AGCCAACTGATGACGACGTTATAATGCACATTTTGAGGCTTCGTGGCAAACTTGGCTGGCAAACAAAGTTACCATCCTGGGAGTATTTAGCTAGAGAGGCTGATGTGGCCAGGCTTCAGAAGTTGGCGCTTACG
Seq C2 exon
AGACCTTTATTGCCAAGAGATAGTGGTGAATATATATATTGTCTTCAAAAACACAAGAACAATCTTAGAGTTCCCTACAACCCATACAATTTACAGGCTGTCTCTGCAAGTACAGCTATGCACAGCAAAGAATATTGGACTGTTACAGCGTCTTTCGTGTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020077_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000031953fB6857
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTAGTGAGCAGCCAAAGGT
R:
CTTAGACACGAAAGACGCTGT
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]