MmuEX7000660 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181590440-181598479:+
Coord C1 exon
chr1:181590440-181590583
Coord A exon
chr1:181593429-181593556
Coord C2 exon
chr1:181598364-181598479
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTAAAACCTTTTTCTGCCAGAAC
3' ss Score
5.11
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GTTATCTTGAACAAAAGTTCAGTCCACAATGTGTAGGGGTTTCAAAACCATTTTTCCCCGATATAAGGAATGCAAAAGTGAAGCCGGAGCAGACTGCCCATACAACCAGGAAGAGGTCCCGAATTCAGCCGTATGACAGAGCAG
Seq A exon
AACCAGAAGAGGCTGACGCCATAAAACATATTTTTAGGCTTAGAGAAAAGCTTGGATGGGAAACTCCATCATTTCTTCGCTCTCTGAAGTACCACCCTAAGACTGTGCTTCCAAGGTGCAGCCTAAAG
Seq C2 exon
ATCACTAAAACAGGCCTCAACATGGAGGATGTGGAGCTTATGCCTACGATGGACTGGCTCTATGAAAGACATTACTTCTACTTACTGCAGAAGTTTAAGATATTTTACAACTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'4-11,'4-3,5-11=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=0.005 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCTTGAACAAAAGTTCAGTCCACA
R:
TTCTGCAGTAAGTAGAAGTAATGTCT
Band lengths:
234-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types