HsaEX6037027 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225147855-225155285:+
Coord C1 exon
chr1:225147855-225148004
Coord A exon
chr1:225152181-225152311
Coord C2 exon
chr1:225155133-225155285
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTAAATTGTTCTATACCAGAAC
3' ss Score
6.49
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
ATTACCTTAGAGAAAGTATAATTCAACAACATATGGTTTCTCCAGAGCCAGCTTCCCTTAAGGAGAAAGGGAAGTCAAGGAGAAAAAAGGATCAAACTCATGCTTGTCCAAATGTTAGGAAAGCCAGGCCTGTGTCCTATGATAGAACAG
Seq A exon
AACCAAAAGATGATGATGTGATAAGAAATATTATTAGGCTACGAGAAAAGCTTGGTTGGCAAACTATATTACCGCAGCACAGTTTGAAATACGGAAGCTCCAAAATTGCAATTCAGAAGATTACTTTAAAG
Seq C2 exon
AAACCTTTGGAAGATGATGGAGAATTTGTTTATTGCCTTCCTCGGAAAAGTCCTAAATCCCTTTACAATCCATATGATCTTCAGGTAGTATCGGCTCATACTGCTAAACATTGCAAAGAATTTTGGGTTATTACTGCTTCATTTATCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'9-19,'9-18,11-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTCCAGAGCCAGCTTCC
R:
CCCAAAATTCTTTGCAATGTTTAGCA
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)