GgaALTD1010866-1/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000012424 | GTDC1
Description
glycosyltransferase-like domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012939]
Coordinates
chr7:32772363-32782077:-
Coord C1 exon
chr7:32781977-32782077
Coord A exon
NA
Coord C2 exon
chr7:32772363-32772622
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TGCTGTTCTCTCTCTTGCAGGGA
3' ss Score
13.44
Exon sequences
Seq C1 exon
GGGAGGCTGGCTCTCCTGCGTGCCGAGGGGAGGGAGGGGCCGGGACGCCGGCGCGTCGGTGCCGACGGTCTCCAGGCGGGAGTGAGGAGGAGGAGGAGGAG
Seq A exon
NA
Seq C2 exon
GGAAGCTCCTGCTCTGCCACATGGAGGGAGAGGCAAGTGTTACCCCTTCCTCTGCTCCAGCTGAGGGCTTTCTGAAGGGACTGCACTTACAGGGCAAGCTGCACACAGAAAGGTACGCTCTGATATAGTCAGAAGCATGTGCTTGAGAAATGCGAAGATACTGTAAGTTCAATAATATGTTCAGCAGAAGCAGCAGCCTGTAAGTAATATACTGAAAGAGGAACTGGATGAAACATGAAGACAACTTCCAAACGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424-3-1,4-1,5-1-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGAGGAGGAGGAGGAGGA
R:
AGTCCCTTCAGAAAGCCCTCA
Band lengths:
104-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]