GgaALTD1011432-4/4 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009250 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr7:15338343-15342080:-
Coord C1 exon
chr7:15341980-15342080
Coord A exon
chr7:15341909-15341979
Coord C2 exon
chr7:15338343-15338454
Length
71 bp
Sequences
Splice sites
5' ss Seq
ACGGTTATA
5' ss Score
-2.41
3' ss Seq
TTATCCAACCTGTTTTCTAGGTT
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGCGGGTAGCCGTGCGCCCTTACGTGAGAGGAAGAGGCGGTGCCCGCCCGACGCCACCAGTAACGGCTGTGCGCTGCGTCTCCACCCCTCAGCGGGCGGCG
Seq A exon
GTGAGTGCGCCAGGCCAGCGCCGGCGTGGGACCGAGCGGGGCGGGAAGGCGCCGAGCTGAACGCTGGCACG
Seq C2 exon
GTTTCCTAGATCTAAAAGAAAGGCCGAGTTAGAGTACCCTTCCAAAATGGCTGCTATTAAGGAAGAGAGAGAGGTGGAAGATTACAAGAGAAAAGGAAGACGATCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250-0-1,1-1,2-1,3-1-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.727
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCTTACGTGAGAGGAAGA
R:
TCTTCCACCTCTCTCTCTTCCT
Band lengths:
168-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]