GgaINT0047996 @ galGal4
Intron Retention
Gene
ENSGALG00000009250 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr7:15338343-15341998:-
Coord C1 exon
chr7:15341980-15341998
Coord A exon
chr7:15338455-15341979
Coord C2 exon
chr7:15338343-15338454
Length
3525 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TTATCCAACCTGTTTTCTAGGTT
3' ss Score
9.18
Exon sequences
Seq C1 exon
CACCCCTCAGCGGGCGGCG
Seq A exon
GTGAGTGCGCCAGGCCAGCGCCGGCGTGGGACCGAGCGGGGCGGGAAGGCGCCGAGCTGAACGCTGGCACGGTTATATCTTTTCTTATTGCACTCTCTTTCCTTCTCCCCGCCTTCCTTCTTCGGCCGGTCCGCGCTCTCTCGTGCTGCCCCCGTTTGGGCGGGAAGGGCCCTCTCCGCGCGCGGCCCGGGACTGGCGGCCTCGCGGGTGGGGGAGGGGCGGCGGGAAGAACGTGCTAACGGCTGCCGCGCGCGCCGCCGCGGTCTCGCTCTTGCCGCGCGCCGCTGCCAGCCCGCTTTCCCGCCACGTGACCTTCCCCCTCCCCCCCTTTCTTTGGGCACCATGTTGATGGGGCGAGGGCGGGCGGGCGGGCTTACAAAATGGAGGTAATACCCGCCGCGCGGGGGGAGTGGGGCGGCCCGGCCGGATGGCGGCGGGGAGCGGCCTCCCTCTTCCCCCCGCGGCAGCGGAGGGGCTCATAACGCTGCCTGGGCGCGCAGGAACGCCGCGCTTGAGCACGGGGAGCGTAATGATGCCTCTCGAGTTCCTCGCGACCGCCACGGTCGCCTTTACCCGCGCCGTGGCGCGGCGGCCGCAATGGCGGCGGCGGGCAGGAAGCGGGAGGCTGCGGGAGGGCCGCGCTTCCGCCCCTCGGCGCTCGGCCGCCATTTCGCTGCGCTGCGGAGCGCGGGGGGAGCGCAGCCTCCATTCTGTGCCCGGGGAGCGCCGGGAGCTTAGAGCCGAGTTGAGGCGAGGGTGGGGAGAAGCGGAAGCCAGGCATCAGCGTGCCTTTGTTCTGCCCTCCTGCGTGGCTGAGAACCGCAGCAGGGCTTTAGCGGCGCTTTTTAGTCGCTCCTTTTCCGGGCAAAAGCCTTTTGAAGCGGGGAGGCCGCTTGCTGTCTCGTCCTGCTGCTCGCTGACGTGTTATGGCACACGGAGCCGCGCTTCTTCTCCCCTCCCAACCCCCCTTCCTCCATCCCGAGGGTGTTTAGCACTTGCAGTGAGCACTGAGGACCCGGGGCATAGTGCAGAGCAGCAGTCCGGGTCATTGCCATTACCCTTTCTGCATGCCCCCAGCTGGAACCGCACAGACATCCGTGGCATCCCGCCATGGTCCCGGTGGGCAGCACAAAGAAGCAGTCCTGCACAAACCACGCTCCACATTTTCTCAACTTGCATTCAAGTGAAGATCAAATCCAGCTTAAAGCGGTGATCCGCACCCTGACCAGAGGGGAACAGCGTACTGATGTCCCCTTTCTTGCTTTTTTTTTCCTTGTTCTCCTCAGAATGTAAATTTTTAGCTCAAGTGTTTCAAAGTATGGTGAGTAAAAATGATGCAGAGTTCTATCTGGGCATTGTGCCCCCTTGCTGGCAAGCTGGAACCTATGTAGGACTGAGAGCAGAGAAACCAGTAGCTCACACTGCTTTCTGTTGCTATGTTAAAAGCAGAAAAGAAACCTGATCCCTTAGCAAAACAGCTAAAAATAACTGTTTTCCATGTAAGCAATTGTTTTATTCCCTGGAACGGTTTGTCAAAGGGGAGCTATGATGAGTTCAAAGCACGCTTCAGTAAAGTTTGCTAAAATCTTGTGCTTTTTTTTTTTTTCCCAGCAGATATTCCTGTTGGCATTGGGAATAAAGTACCAACACACTTAGAACTGAAAATCTCTTAATTTGCTGCCTTAAGTCTTAGATTTGGCAAGATATATGATATGCACACGAGGTCCAACTTTGTCTGTACACAAAAAACACCAGTACATCTCTGTAGTGTTTTGTGAATGGAGGAGATTTGTCTTGAGAACATCAGTTTCCCCTCTGCTATAATAGTACTTGTCTCTTCAATGGCGGTTAAATTCAGTAGATAAAAACGTACTGAATATTTTAAAACTATTGATATTTCATTGATACTAATTATAAAAAATAGTATTTACAGAGATAGAGTGGAATTGAGGCTGTAGAGGGCTTTATTCCACTTCAGCTCACAGTATTCACCAATAAGGCAGTAATTATCTTCTGCCCATCATCAGTGTGTGCTATATGTTTGGTATGTAGCCCCACTGGGGAAAGCAGGTGGCAAAATCAGGGGAATTGCATACTTTAGGTTACTCCAGAAAGTATCCAGACTTTTCCCTTTGTCCCCAAATACTTCCAAGAGATGCATTTGGGATTTGAGGAATTGAATGGCCCAGAAGACATCGGGATGCTAAGTATTATCAACTAAATGGACCTATTTGAAGGATCTCAAGGACAGGTTTAACTCAAGTTAATACACATGCCTTGATTTTACTTCCTGAAACTTGGAAGTTGTTAAGACATTAAATCTTTGTACTCATCATTTCGCAGTTGGGCTCAATATTAAGATCTTAATTTAAAGCTTAGTTTGGCTTTAAATGTGGAATTATATTCAGGATGAAAATTATTTAATTGTAGTGTAACATAAATTAGGACCTACCTGCTTTTCTCTCTGCAATATTTGCTGGAATAAAACATGAAAAGCAGAGGAGACCAATGCAATGTTTGAACAGTTACAAACAATATACCTAATCTTGTCAGCGTAGATTATTTGAAAGCAGCACAAGTGTGGTTTTACAGTAGCATATTATTTAGGTAACTACTTTGGCTACTGTAATAAGTTTCAAGGCGCATCTGAAGTAGTAAGAAATTCCTGCCAAAGGTTGAAACAGCGTAGTAAGAGAAGCTGAGCGACTTAATGATCTTGGGGAAGCTTGAAATAATAAAGGTTATGGGGAATGTGACTGTTGGCTTGTTTGTTTGAGCGCTTCCATAGAGAGGCACTCACTGAGTTTGTCTGCTGAAGTGCTTGCTTTTTGTGATGATGTGTAACTTCATTAACATTCATTGGTACAAATTGGGCATGCGAGTGTAGAGTACAGAATCATAATGAAATATACCATTTGCAAGGGAAGTAATGCAGATGACCAGTGCTGCAGATTCCTGAGGATCAGCTGTTGGCATTTCTGGTTATGCGAGAATAGAATCACGAAAGGATTCTTCCACTGGTGTTAGTGGAAAATATTTTGCAGCACAGAAACTATTTTACATCCTTCAGTTGGTGGGATCCCAGATTACTGATACAGTAGGTCATGTGCAAGATAATAATTTTAGTAAGTATTATTTACAATAGGTTTTTTTGCGATAAGAAAGATTTAAAATCTGGAGGTGTAGGGTTTGCCTGTTGAAGTAGGAGACCTGTTCATGGTAGTTATGTAAGACAGTATTTGCCATAAGTGATGCTCTGCGGAGAATCGCACTGTTTTGCCTTCTGTTGCGCCTCGTTATTCCAGCGGTTGTAAAACACCTTCATCAGGTAGCTGCTGTGCTTTGTGCAGCAACTCCTGGGTGACGTAGGCTGAGGATTTTTACCCTTGGAAATGATTGCATTTTTTCCACTTTTACCCTTTTCCATCTCCTCTCCTGTAAAGACGTACCTGTGCATTGCAGCCAGAGAAGGCCCTGCTTCGTAGGAACTGGGGTGAGTACTGACTTATCCAACCTGTTTTCTAG
Seq C2 exon
GTTTCCTAGATCTAAAAGAAAGGCCGAGTTAGAGTACCCTTCCAAAATGGCTGCTATTAAGGAAGAGAGAGAGGTGGAAGATTACAAGAGAAAAGGAAGACGATCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250:ENSGALT00000038715:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.727
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]