GgaINT0047996 @ galGal3
Intron Retention
Gene
ENSGALG00000009250 | HNRNPA3
Description
NA
Coordinates
chr7:16941169-16944785:-
Coord C1 exon
chr7:16944735-16944785
Coord A exon
chr7:16941281-16944734
Coord C2 exon
chr7:16941169-16941280
Length
3454 bp
Sequences
Splice sites
5' ss Seq
ACGGTTATA
5' ss Score
-2.41
3' ss Seq
TTATCCAACCTGTTTTCTAGGTT
3' ss Score
9.18
Exon sequences
Seq C1 exon
CCGGCGTGGGACCGAGCGGGGCGGGAAGGCGCCGAGCTGAACGCTGGCACG
Seq A exon
GTTATATCTTTTCTTATTGCACTCTCTTTCCTTCTCCCCGCCTTCCTTCTTCGGCCGGTCCGCGCTCTCTCGTGCTGCCCCCGTTTGGGCGGGAAGGGCCCTCTCCGCGCGCGGCCCGGGACTGGCGGCCTCGCGGGTGGGGGAGGGGCGGCGGGAAGAACGTGCTAACGGCTGCCGCGCGCGCCGCCGCGGTCTCGCTCTTGCCGCGCGCCGCTGCCAGCCCGCTTTCCCGCCACGTGACCTTCCCCCTCCCCCCCTTTCTTTGGGCACCATGTTGATGGGGCGAGGGCGGGCGGGCGGGCTTACAAAATGGAGGTAATACCCGCCGCGCGGGGGGAGTGGGGCGGCCCGGCCGGATGGCGGCGGGGAGCGGCCTCCCTCTTCCCCCCGCGGCAGCGGAGGGGCTCATAACGCTGCCTGGGCGCGCAGGAACGCCGCGCTTGAGCACGGGGAGCGTAATGATGCCTCTCGAGTTCCTCGCGACCGCCACGGTCGCCTTTACCCGCGCCGTGGCGCGGCGGCCGCAATGGCGGCGGCGGGCAGGAAGCGGGAGGCTGCGGGAGGGCCGCGCTTCCGCCCCTCGGCGCTCGGCCGCCATTTCGCTGCGCTGCGGAGCGCGGGGGGAGCGCAGCCTCCATTCTGTGCCCGGGGAGCGCCGGGAGCTTAGAGCCGAGTTGAGGCGAGGGTGGGGAGAAGCGGAAGCCAGGCATCAGCGTGCCTTTGTTCTGCCCTCCTGCGTGGCTGAGAACCGCAGCAGGGCTTTAGCGGCGCTTTTTAGTCGCTCCTTTTCCGGGCAAAAGCCTTTTGAAGCGGGGAGGCCGCTTGCTGTCTCGTCCTGCTGCTCGCTGACGTGTTATGGCACACGGAGCCGCGCTTCTTCTCCCCTCCCAACCCCCCTTCCTCCATCCCGAGGGTGTTTAGCACTTGCAGTGAGCACTGAGGACCCGGGGCATAGTGCAGAGCAGCAGTCCGGGTCATTGCCATTACCCTTTCTGCATGCCCCCAGCTGGAACCGCACAGACATCCGTGGCATCCCGCCATGGTCCCGGTGGGCAGCACAAAGAAGCAGTCCTGCACAAACCACGCTCCACATTTTCTCAACTTGCATTCAAGTGAAGATCAAATCCAGCTTAAAGCGGTGATCCGCACCCTGACCAGAGGGGAACAGCGTACTGATGTCCCCTTTCTTGCTTTTTTTTTCCTTGTTCTCCTCAGAATGTAAATTTTTAGCTCAAGTGTTTCAAAGTATGGTGAGTAAAAATGATGCAGAGTTCTATCTGGGCATTGTGCCCCCTTGCTGGCAAGCTGGAACCTATGTAGGACTGAGAGCAGAGAAACCAGTAGCTCACACTGCTTTCTGTTGCTATGTTAAAAGCAGAAAAGAAACCTGATCCCTTAGCAAAACAGCTAAAAATAACTGTTTTCCATGTAAGCAATTGTTTTATTCCCTGGAACGGTTTGTCAAAGGGGAGCTATGATGAGTTCAAAGCACGCTTCAGTAAAGTTTGCTAAAATCTTGTGCTTTTTTTTTTTTTCCCAGCAGATATTCCTGTTGGCATTGGGAATAAAGTACCAACACACTTAGAACTGAAAATCTCTTAATTTGCTGCCTTAAGTCTTAGATTTGGCAAGATATATGATATGCACACGAGGTCCAACTTTGTCTGTACACAAAAAACACCAGTACATCTCTGTAGTGTTTTGTGAATGGAGGAGATTTGTCTTGAGAACATCAGTTTCCCCTCTGCTATAATAGTACTTGTCTCTTCAATGGCGGTTAAATTCAGTAGATAAAAACGTACTGAATATTTTAAAACTATTGATATTTCATTGATACTAATTATAAAAAATAGTATTTACAGAGATAGAGTGGAATTGAGGCTGTAGAGGGCTTTATTCCACTTCAGCTCACAGTATTCACCAATAAGGCAGTAATTATCTTCTGCCCATCATCAGTGTGTGCTATATGTTTGGTATGTAGCCCCACTGGGGAAAGCAGGTGGCAAAATCAGGGGAATTGCATACTTTAGGTTACTCCAGAAAGTATCCAGACTTTTCCCTTTGTCCCCAAATACTTCCAAGAGATGCATTTGGGATTTGAGGAATTGAATGGCCCAGAAGACATCGGGATGCTAAGTATTATCAACTAAATGGACCTATTTGAAGGATCTCAAGGACAGGTTTAACTCAAGTTAATACACATGCCTTGATTTTACTTCCTGAAACTTGGAAGTTGTTAAGACATTAAATCTTTGTACTCATCATTTCGCAGTTGGGCTCAATATTAAGATCTTAATTTAAAGCTTAGTTTGGCTTTAAATGTGGAATTATATTCAGGATGAAAATTATTTAATTGTAGTGTAACATAAATTAGGACCTACCTGCTTTTCTCTCTGCAATATTTGCTGGAATAAAACATGAAAAGCAGAGGAGACCAATGCAATGTTTGAACAGTTACAAACAATATACCTAATCTTGTCAGCGTAGATTATTTGAAAGCAGCACAAGTGTGGTTTTACAGTAGCATATTATTTAGGTAACTACTTTGGCTACTGTAATAAGTTTCAAGGCGCATCTGAAGTAGTAAGAAATTCCTGCCAAAGGTTGAAACAGCGTAGTAAGAGAAGCTGAGCGACTTAATGATCTTGGGGAAGCTTGAAATAATAAAGGTTATGGGGAATGTGACTGTTGGCTTGTTTGTTTGAGCGCTTCCATAGAGAGGCACTCACTGAGTTTGTCTGCTGAAGTGCTTGCTTTTTGTGATGATGTGTAACTTCATTAACATTCATTGGTACAAATTGGGCATGCGAGTGTAGAGTACAGAATCATAATGAAATATACCATTTGCAAGGGAAGTAATGCAGATGACCAGTGCTGCAGATTCCTGAGGATCAGCTGTTGGCATTTCTGGTTATGCGAGAATAGAATCACGAAAGGATTCTTCCACTGGTGTTAGTGGAAAATATTTTGCAGCACAGAAACTATTTTACATCCTTCAGTTGGTGGGATCCCAGATTACTGATACAGTAGGTCATGTGCAAGATAATAATTTTAGTAAGTATTATTTACAATAGGTTTTTTTGCGATAAGAAAGATTTAAAATCTGGAGGTGTAGGGTTTGCCTGTTGAAGTAGGAGACCTGTTCATGGTAGTTATGTAAGACAGTATTTGCCATAAGTGATGCTCTGCGGAGAATCGCACTGTTTTGCCTTCTGTTGCGCCTCGTTATTCCAGCGGTTGTAAAACACCTTCATCAGGTAGCTGCTGTGCTTTGTGCAGCAACTCCTGGGTGACGTAGGCTGAGGATTTTTACCCTTGGAAATGATTGCATTTTTTCCACTTTTACCCTTTTCCATCTCCTCTCCTGTAAAGACGTACCTGTGCATTGCAGCCAGAGAAGGCCCTGCTTCGTAGGAACTGGGGTGAGTACTGACTTATCCAACCTGTTTTCTAG
Seq C2 exon
GTTTCCTAGATCTAAAAGAAAGGCCGAGTTAGAGTACCCTTCCAAAATGGCTGCTATTAAGGAAGAGAGAGAGGTGGAAGATTACAAGAGAAAAGGAAGACGATCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250:ENSGALT00000038715:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.761
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]