BtaINT0072894 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005726 | HNRNPA2B1
Description
Bos taurus heterogeneous nuclear ribonucleoprotein A2/B1 (HNRNPA2B1), mRNA. [Source:RefSeq mRNA;Acc:NM_001045975]
Coordinates
chr4:70198053-70200712:+
Coord C1 exon
chr4:70198053-70198191
Coord A exon
chr4:70198192-70200601
Coord C2 exon
chr4:70200602-70200712
Length
2410 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACG
5' ss Score
9.65
3' ss Seq
AATGCTGTTTTCCTTTGCAGAGA
3' ss Score
11.43
Exon sequences
Seq C1 exon
CCAGCGGTGTTGTTTCTCGAGCAGCGGCAGTTCTCACTACAGCGCCAGGACGAGTCCGGTTCGTGTTCGTCCGCGGAGATCTCTCTCATCTCGCTCGGCTGCGGGAAATCGGGCTGAAGCGACTGAGTCCGCGATGGAG
Seq A exon
GTAACGGGTTTGAAATCAATGAGTTGTTGGAAAGGGCATGGCGAGGCCGTTGGCGCCTTATTGGAAGTCGGCCATCCGCCTCCGTGGGAGAGCGGCAGCGAAATTGGGCCACTTCATGAGCGGTTGGTCTCAGGGTATTTTTGGAGAGGGGTCGTTAGCAGAGGCCTAATTGTACAGCACCTTCCCCACCCTCAGCCTCACGGCGCCATTTCCCTTTGCTGTGGGTGGGGGATGGGGAGCTTCCACATGGCGGACGCAGCCCCTCTTTACTGAAAGTGGGGCGCGGAGGCAGGAATTCCTACATCGTTTTTAAGGAAGGGTGGTTTGGGGGTCTCGGCGTCCCCGCGTTGGAGCGTTTTGGCGGGTTTTGGGTCCTAGCGAACCGGGCTGCGGAGCTTCCCCTCCCCCCTCCCTGGAACCGGATTTGGCGGCCGCCATTTTCATTTCTCTCCTTCCTCGCAGCGATTTCTTTTTAACTCTCTAAATTTGACTAGCTTGACTTTTTCAGTAAGGACTAGAAGTGGGTAACTATTTATTTCTCTTTTCGGACTGTTTTCATGCTATTTCGAGGTGGATTCCGAGTGTTTACGGAGCTTGGCGCTTTAAAGTCCTGCGCACCTCATTAGAGGCTCGCTCCCTTCCCCTCGATGAAATGGCGCCATTGCGTTCAGGAGCCGCACCGAAGGGCGGGGGGAGGGGCGGCGTTCTCCTGGGCGGTTTCTCTCGGCCTAGGAGGTGAAACCCTCTAGGGTGTTGGGCCCGGTTTCACGCGAGCCATGGTATAAAGACCTCACGTTTTGTTTTTCAGTCCTTGTTTGAGTAACAGTTTTACCTGCGTTTCCGGTGATTGAAAAGGCAGTTGAATCGTAGGAAAATAAGATGAAAATTTTAGAGAAGATTATCGTTTTTGCGGGAGGCCGTGGGGAAGGTGGTCTTTGGGGGTGGGCGGTGTTCAGTACAGAATCCTTTATTTTCCTGACGGATTCTTTTTTAATCGTATAATTTGTATTTTAAGTAGTATTTTTATCGGGGAATTTAGTCTTTACTGGGTAAAACTACGGGTGTTTTTTTAGTGATAAACTTGAAATTATGAGTTTAGTTGTACTCTAATTAAAACATGGCTCGGTCCCTCAATGCGTGTTCTGCTGTATACAAAACTTTTATTAGGCTGAGCCACTATGTTTTTGAACTTTGTCACTTGCTTTTCTCGTTTATGTTTGCAATCATGGTTGATGATTACATTGATAAGCATAAGGTCTCAAGCGAAGGGGGTCTGCCTGGGTATTTTCATTGACCCTAAGCACGCTTATAAAATAACTTTGTTTGTAATCGATAGTGGACAGCGGGTAAGTTTGGAAAATGAGGTAAGTAATGAGTTTTGCCTTTAGTGATTTGTAATGTGTAGATGTATTTTAGTCTCTCTATTTGGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATTTTGTAACTAGAGGGGATAGTCACAGTGGTCATTTAAATATTTTTATGGTTTTTGAAAAAAGTGATTACAGTGTCTTTTACTGTATTTGTCTTTTGGTTCAGTAATAGTTGATTGTGCCGTCAACAAAACCAGCTATATTAAAGTATGTGCTTTAGACACCGTTAATCATAAAAGTCATTTTACCTTGGTCAGAAAACATAAATTTTGAGGCTATTTTGCCACATATATTGAACATTTAAGATTTTCTCTGGAGAGTTGGTATATGAGAAAGAAAGTCAATACTAAGTTTTCCAGGGTTTTGAAAATTGAGTTACATTATAGTCACCACCAGAGGGAGCAATGACGGGAAACTCATTTTTTAAATGCTAAATCCAGAAATAAATGGGAACTGTGGGTTATAAAGCAAAAGTTGTTATATTTTAAGAATTTGTATTTGAATATGTAAAAGTGAACTTCTCTGTTCTGAGTTATAGGATCGAATGCAGATGTTGATAAGACTCTTAACTTTACAGTCACCAGGGAATAGATTTGCTCTTCTTTCTTCAGAAAGATTTTTTTTAAAACTAAGTGATGCTATATTTGTTTAAACTCATTTAATGTCAAGTAAATTTATATCAAGCATAATGGTTTTGAAATGTGTAGTTTGGTTGAGGCATTTTTTTTTTTTTGGTGTAACACAACTAATATGCAGTTTAACATATGGTTTAAATTTGATGTAAGTTTTTTTTTTCCCCCCAGAAAACTTTAGAAACTGTTCCTTTGGAGAGGAAAAAGGTACTCTGCCAGCAGGTCACCTCATATTTAAGAATTTTATTTCCAGCATACAAAAAGAAAATGTAAATAAAAATTGAAATGCTGTTTTCCTTTGCAG
Seq C2 exon
AGAGAAAAGGAACAATTCCGTAAACTCTTTATTGGTGGCTTGAGCTTTGAAACTACAGAAGAAAGTTTGAGGAACTACTACGAGCAATGGGGAAAACTTACAGATTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005726:ENSBTAT00000007527:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF142591=RRM_6=PU(40.0=75.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]